Query= MSMg01no176_n11.b1 MSMg01no176_n11.b1 CHROMAT_FILE:
MSMg01no176_n11.b1 PHD_FILE: MSMg01no176_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:06 2005
(665 letters)
>mm_chr9_119523947_119525011
Length = 1065
Score = 1154 bits (597), Expect = 0.0
Identities = 648/665 (97%)
Strand = Plus / Minus
Query: 1 tttgtaacccgataccacccgctcagccccataagcctgatcctccctaatgcctggaac 60
||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 865 tttgtaacctgataccacctgcacagctacataagcctgatcctccctaatgcctggaac 806
Query: 61 caagaaggaaacgcaagggggatttttcctactttatctaatattactggaaattttagg 120
||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 805 caaaaaggaaacgcaagggggatttttcctaccttatctgatattactggaaattttagg 746
Query: 121 gtacaagcctggctctggcagacctaacaagtgggactctaactcccatcctcaaagtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtacaagcctggctctggcagacctaacaagtgggactctaactcccatcctcaaagtgc 686
Query: 181 taagtagagagacaagtaagactggaaaccagagagaggagattattcaacatggccaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taagtagagagacaagtaagactggaaaccagagagaggagattattcaacatggccaca 626
Query: 241 aataaagagaaagaaataaagagatcacagatgcccaagtctatcctctaagtcctgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aataaagagaaagaaataaagagatcacagatgcccaagtctatcctctaagtcctgatt 566
Query: 301 tgagttttaggttgaaatagactgtgggagatatgcataggaagccctagtcaagtatgg 360
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 565 tgagttttaggttgaaatagacagtgggagatatgcataggaagccctggtcaagtatgg 506
Query: 361 tcctgcctgtcactgaccggtcaataactcacttccagtctatcctgcaaactgaccagt 420
||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||
Sbjct: 505 tcctgcctgtcactgaccggtcactaacttacttccagtctatcctgcagcctgaccggt 446
Query: 421 tgccaaaactgcaaaaaatctcttcccgggagacaagctcccctctggctggcacaggac 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 tgccaaaactgcaaaaaatctcttcctgggagacaagctcccctctggctggcacaggac 386
Query: 481 tttgctcttctattccttcacccagaatgagactcctagggaaattcagttgctcagggt 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgctcttctattccttcacccagcatgagactcctagggaaattcagttgctcagggt 326
Query: 541 ctgtgtaccagtagtctgatggtcaaacggaggggcacaaaggcctccactcctcccagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtgtaccagtagtctgatggtcaaacggaggggcacaaaggcctccactcctcccagg 266
Query: 601 accagctttctttccatccagcatctgtctctggaatgttccaccgatgtgtttgggagc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accagctttctttccatccagcatctgtctctggaatgttccaccgatgtgtttgggagc 206
Query: 661 cgagc 665
|||||
Sbjct: 205 cgagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_n11.g1 MSMg01no176_n11.g1 CHROMAT_FILE:
MSMg01no176_n11.g1 PHD_FILE: MSMg01no176_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:06 2005
(385 letters)
>mm_chr9_119371570_119372351
Length = 782
Score = 708 bits (366), Expect = 0.0
Identities = 377/382 (98%), Gaps = 3/382 (0%)
Strand = Plus / Plus
Query: 1 actctgtacctgagcacgaggaagattgatggagcccggtctgtggccagactggagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtacctgagcacgaggaagattgatggagcccggtctgtggccagactggagaag 260
Query: 61 gttctggaagctttgaagagctcaggggtggaacctgacgattacttcctgagtcgctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctggaagctttgaagagctcaggggtggaacctgacgattacttcctgagtcgctat 320
Query: 121 gagaaaaagctggaggaactgaaggctaaggagcaaaaggacgcccagctggaaaagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaaagctggaggaactgaaggctaaggagcaaaaggacgcccagctggaaaagcag 380
Query: 181 tcctagtgtctgtctcggtgtgcactgagcacctgtgaccaacaggtttattttcaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctagtgtctgtctcggtgtgcactgagcacctgtgaccaacaggtttattttcaagaa 440
Query: 241 atgatggaattctgaccaaaatcccccaaagactcggggctcaaaactcagtgtcgttgt 300
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 atgatggaattctgaccaaaatcctccaaagactcggggctcaaaactcagtgtcgt--- 497
Query: 301 ccttcactgggatccgaggtggctgagatggttttaaaactctgctctcacgtgctcctt 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccttctctgggatccgaggtggctgagatggttttaaaactctgctctcacgtgctcctt 557
Query: 361 ccctcatgaccctgaagtcctc 382
||||||||||||||||||||||
Sbjct: 558 ccctcatgaccctgaagtcctc 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 782
Length adjustment: 9
Effective length of query: 376
Effective length of database: 773
Effective search space: 290648
Effective search space used: 290648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
