BAC Information

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BAC

Clone NameMSMg01-177E15
Chromosome9 (Build37)
Map Location 19,320,290 - 19,320,928
singlet/doubletsinglet
Overlap genenone
Upstream geneMuc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851
Downstream geneOlfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177E15.T7 (MSMg01no177_e15.b1)MSMg01-177E15.TJ (MSMg01no177_e15.g1)
ACCAG371718AG371719
length710715
length of high quality
(start - end)		243 (70 - 312)638 (78 - 715)
definitionCHROMAT_FILE: MSMg01no177_e15.b1 PHD_FILE: MSMg01no177_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:50 2005CHROMAT_FILE: MSMg01no177_e15.g1 PHD_FILE: MSMg01no177_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGCGAGGACCGCGG
AATTCTCTTTCCAAAAACCAAATGGCAGAGAAGCACCTGAAAAAATGTTC
ACATCCTTAATCATCACGGAAATGCAAATCTAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGTTAT
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ACTGGATATTGNATTACTGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAACATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCCCATTTATAATAGACAGAAGCTGGAAGGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACATATTCACAAAGGAA
CTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCATTATTTTTT
TATTCCTAGATACCACATACAATTTCCTATACTCATGAAACTCCTGATAA
ATGACCACTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCGCCTGGTCTACAAAGA
AACCCTGTCTCATAAAAACCAAATAAACAAAAAAAAAAGATAATCACTAG
TTATGGATGGCCTATGATGGGTTTACATTGATTATAATGCTCTATTTTAT
CCTAAATCATAGATATAAATAGACAAAATACATGATCATATCTACAAAAT
TCATTTATATATATAGTCCACAAATTGTGTTATATTTCTCAAATAAAAGT
AAATAAAGAACTTCTGTGCATAATATTTCTAATATATTCTAGAGACAATA
TTCTTAGGGAGGCTAGAAAAAGAGCTAAGTAGTTAAATTTGTATACCCAC
CCCTGCCTGCCGAGCAAATTAGTTTGGCTCACAAGACCCATGTCATAATG
CTAACACCTGCCTCTACAAACCAATGCATTTTTCTTGCCTATGTGGACAC
TGTACGCACAGATACACAAAAGGATTCTAGAAAGTATATTCCAACACAAT
CAGGGTACATAAAGGTACCAAAGAAAAATCAAGATATTAATTATCTCACA
ACAAAGCCAAAAGGGGAGAATTGCCTGCACATAATGCCACCTACAACAAC
AAACATATCAGGAACTAAGAATCATCTGTCTTTAACAACTCTCAATTTTA
ATGCACTCAGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_e15.g1 MSMg01no177_e15.g1 CHROMAT_FILE:
MSMg01no177_e15.g1 PHD_FILE: MSMg01no177_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:50 2005
         (638 letters)



>mm_chr9_19320089_19321128
          Length = 1040

 Score = 1197 bits (619), Expect = 0.0
 Identities = 634/639 (99%), Gaps = 2/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   aggcccgcctggtctacaaagaaaccctgtctcataaaaaccaaataaacaaaaaaaaaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aggcccgcctggtctacaaagaaaccctgtctcataaaaaccaaataaacaaaaaaaaaa 261

                                                                       
Query: 62  -gataatcactagttatggatggcctatgatgggtttacattgattataatgctcta-tt 119
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 262 agatattcactagttatggatggcctatgatgggtttacattgattataatgctctactt 321

                                                                       
Query: 120 ttatcctaaatcatagatataaatagacaaaatacatgatcatatctacaaaattcattt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttatcctaaatcatagatataaatagacaaaatacatgatcatatctacaaaattcattt 381

                                                                       
Query: 180 atatatatagtccacaaattgtgttatatttctcaaataaaagtaaataaagaacttctg 239
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttatatagtccacaaattgtgttatatttctcaaataaaagtaaataaagaacttctg 441

                                                                       
Query: 240 tgcataatatttctaatatattctagagacaatattcttagggaggctagaaaaagagct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcataatatttctaatatattctagagacaatattcttagggaggctagaaaaagagct 501

                                                                       
Query: 300 aagtagttaaatttgtatacccacccctgcctgccgagcaaattagtttggctcacaaga 359
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 502 aagtagttaaatttgtatacccacccctgcctgccgagtaaattagtttggctcacaaga 561

                                                                       
Query: 360 cccatgtcataatgctaacacctgcctctacaaaccaatgcatttttcttgcctatgtgg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccatgtcataatgctaacacctgcctctacaaaccaatgcatttttcttgcctatgtgg 621

                                                                       
Query: 420 acactgtacgcacagatacacaaaaggattctagaaagtatattccaacacaatcagggt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acactgtacgcacagatacacaaaaggattctagaaagtatattccaacacaatcagggt 681

                                                                       
Query: 480 acataaaggtaccaaagaaaaatcaagatattaattatctcacaacaaagccaaaagggg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acataaaggtaccaaagaaaaatcaagatattaattatctcacaacaaagccaaaagggg 741

                                                                       
Query: 540 agaattgcctgcacataatgccacctacaacaacaaacatatcaggaactaagaatcatc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agaattgcctgcacataatgccacctacaacaacaaacatatcaggaactaagaatcatc 801

                                                  
Query: 600 tgtctttaacaactctcaattttaatgcactcagttccc 638
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tgtctttaacaactctcaattttaatgcactcagttccc 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1040
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1030
Effective search space:   646840
Effective search space used:   646840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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