BAC Information

Click to search

BAC

Clone NameMSMg01-177I01
Chromosome9 (Build37)
Map Location 90,588,657 - 90,589,094
singlet/doubletsinglet
Overlap genenone
Upstream geneTmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177I01.T7 (MSMg01no177_i01.b1)MSMg01-177I01.TJ (MSMg01no177_i01.g1)
ACCAG371874AG371875
length726712
length of high quality
(start - end)
662 (44 - 705)439 (73 - 511)
definitionCHROMAT_FILE: MSMg01no177_i01.b1 PHD_FILE: MSMg01no177_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:05 2005CHROMAT_FILE: MSMg01no177_i01.g1 PHD_FILE: MSMg01no177_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCGCACAATATCTACTCACTGATAAGTGGATATTAGCCCAGAAACT
TAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAATTCAAG
AAGAACGAAGACCAAAGTGTGGACACCTTGCCCCTTCTTAGAAATGGGAA
CAAAACTCCCATTGAAGGAGTTACAGAGACAAAATTTGGAGCTGAGACGA
AAGGATGGACCATCTAGTGATTGCCATATGCAGGGATCCATCCCATAATC
AGCTCCCAAGCGCTACACCATTGCATACACTAGCAAGATTTTGCTGAAAG
GACCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGCCTAGCAAACAC
AGAAGTGGATGATCACAGTCAGCTATTGGATGGGTCACACGGCCCCCCAA
TGGAGGAGCTAGAGAAATTACTCAAGGAGCTAAAGGGAACTGCAACCCTA
TAGGTGGAACAACATTATGAACTAACCAATACCTCGGAGCTCTTGACTCT
AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA
GGCCCATTGGACTTGCAAACTGTATATGCCCCAGTACAGGGGAACCCCAG
GGCCAAAACGGGGGAGTGGGTGGGTATGGCAGACTATTGGGATAGCATTG
AACATGTACACAAGGAAAATACCTAT
CGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCTGACCACAGACGGTATCTAGCAGA
CACAAATTTCTTCAGAGCTTTGTGAAGAGCTGTAGCAAAATTCCAAACTA
ATCCGGTCCCATTTCAAGAGCAAATATGCCTATGTGGGGAGAAAGGTGGA
GTGGGGTGTGACCCTCCCAGACCACTTACATTAAGAAACAAACCAAACAG
AAGTTCAAAAGGTATTTACATTTAAGTGGCGGGGAAAGAAAATTTCAGCT
AATTTGAGGATTGTGTTGTTTCTTGTACCCCCCCAACCAGTCAATTTATA
TAAAAACCTACAGTTATAATATCTGCTATATTTTAAGATTTTTACTTGAC
TGAACAGATTTTAAAATGCTTGCGAAGGTTTGTTTCCCCTTCGTTGTATG
ATGAAAAGAAATACCACATTTTACAATTAAATTGAAGAAGTGCTTGACTA
CTCCACCCCGCACACAGGAAGACAGACCTACTTGCCTATCAGCACACTAA
ATTCAGCTAGATCTTCCTGCAAAACATTCATTTTAAGAATCCCTATTGGT
TTATTTTAGTGCATTTGCTTGGAGACTTTTAAAAACTGACTATTGGCCAG
GAAACAATGAAGGCTTAGGCAATTTGAAGTACAGGCAGGCCTCCTTATGA
AACCGTGTAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_i01.g1 MSMg01no177_i01.g1 CHROMAT_FILE:
MSMg01no177_i01.g1 PHD_FILE: MSMg01no177_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:05 2005
         (439 letters)



>mm_chr9_90588457_90589296
          Length = 840

 Score =  793 bits (410), Expect = 0.0
 Identities = 431/438 (98%), Gaps = 1/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctgaccacagacggtatctagcagacacaaatttcttcagagctttgtgaagagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttcctgaccacagacggtatctagcagacacaaatttcttcagagctttgtgaagagctg 579

                                                                       
Query: 61  tagcaaaattccaaactaatccggtcccatttcaagagcaaatatgcctatgtggggaga 120
           ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 578 tagcaaaattccaaactaaacctgtcccatttcaagagcaaatatgcctatgtggggaga 519

                                                                       
Query: 121 aaggtggagtggggtgtgaccctcccagaccacttacattaagaaacaaaccaaacagaa 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaggtggggtggggtgtgaccctcccagaccacttacattaagaaacaaaccaaacagaa 459

                                                                       
Query: 181 gttcaaaaggtatttacatttaagtggcggggaaagaaaatttcagctaatttgaggatt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 458 gttcaaaaggtatttacatttaagtggcggggaaagaaattttcagctaatttgaggatt 399

                                                                       
Query: 241 gtgttgtttcttgtacc-cccccaaccagtcaatttatataaaaacctacagttataata 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtgttgtttcttgtaccacccccaaccagtcaatttatataaaaacctacagttataata 339

                                                                       
Query: 300 tctgctatattttaagatttttacttgactgaacagattttaaaatgcttgcgaaggttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctgctatattttaagatttttacttgactgaacagattttaaaatgcttgcgaaggttt 279

                                                                       
Query: 360 gtttccccttcgttgtatgatgaaaagaaataccacattttacaattaaattgaagaagt 419
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 278 gtttccccttcgttgtatgatgaaaagaaataccacattttaaaattaaattgaataagt 219

                             
Query: 420 gcttgactactccacccc 437
           ||||||||||||||||||
Sbjct: 218 gcttgactactccacccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space:   357330
Effective search space used:   357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)