Query= MSMg01no178_h24.b1 MSMg01no178_h24.b1 CHROMAT_FILE:
MSMg01no178_h24.b1 PHD_FILE: MSMg01no178_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:19 2005
(554 letters)
>mm_chr9_51067948_51068901
Length = 954
Score = 977 bits (505), Expect = 0.0
Identities = 546/569 (95%), Gaps = 19/569 (3%)
Strand = Plus / Plus
Query: 5 gaattcttcaaggttgccagtacaaggg-aaaaaagcccattcttt-----ag----g-- 52
|||||||||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct: 186 gaattcttcaaggttgacagtacaaggggaaaaaagcccattcttttgaacagtaaagtt 245
Query: 53 -c------accaaatctttaggcacacttaagtacagcacctgtgggacaccgcccaggt 105
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctcggaaaccaaatctttaggcacacttaagtacagcacctgtgggacaccgcccaggt 305
Query: 106 tcaagccaatacttatcaactttccaaattactccacaagataagggctgggccacagtg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcaagccaatacttatcaactttccaaattactccacaagataagggctgggccacagtg 365
Query: 166 caataaactatgtagatatctgtttgcacactagagagcaaagcaagataatgacttctt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caataaactatgtagatatctgtttgcacactagagagcaaagcaagataatgacttctt 425
Query: 226 attaaatacttagactcgatagttctctgcttatgttctaatttttccatatttcagttt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 attaaatacttagactcgatagttctctgcttatgttctaatttttccatatttcagttt 485
Query: 286 tttatctcttctgatttggtagaaagaatttcatacaggaatatgagcatgaacctcctt 345
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttatcttttctgatttggtagaaagaatttcatacaggaatatgagcatgaacctcctt 545
Query: 346 tgagatgaaatgagtcctgactagcttgccacctgtagagagcccatcagagaatttcct 405
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 546 tgagatgaaatgagtcctgactagcttgccacctgtagagaggccatcagagaatttcct 605
Query: 406 atgtggtagcaacgcaatgaatgtcctgtgaatatagaatatagcctggaaacttcaagc 465
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atgtggtagcaacacaatgaatgtcctgtgaatatagaatatagcctggaaacttcaagc 665
Query: 466 cctttccaggaatgtccctttcaatttttcttcaggattctcaggctgatagttcagggg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cctttccaggaatgtccctttcaatttttcttcaggattctcaggctgatagttcagggg 725
Query: 526 ctggcgagatgactcatttgtcaaagatt 554
|||||||||||||||||||||||||||||
Sbjct: 726 ctggcgagatgactcatttgtcaaagatt 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_h24.g1 MSMg01no178_h24.g1 CHROMAT_FILE:
MSMg01no178_h24.g1 PHD_FILE: MSMg01no178_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:19 2005
(580 letters)
>mm_chr9_51171855_51172836
Length = 982
Score = 1071 bits (554), Expect = 0.0
Identities = 580/602 (96%), Gaps = 22/602 (3%)
Strand = Plus / Minus
Query: 1 cagtggaagccaatttgaatggaagacccttaaagaagactgtgaggaacaggctaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cagtggaagccaatttgaatggaagacccttaaagaagactgtgaggaacaggctaagtc 650
Query: 61 tggaaaactattagatttggaagaaggcatgctgagagaaatagagggtgagactagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tggaaaactattagatttggaagaaggcatgctgagagaaatagagggtgagactagaca 590
Query: 121 ggtctgaatggggcatcgtaagaaatcacagccacatacacagaacaaaaggctttagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ggtctgaatggggcatcgtaagaaatcacagccacatacacagaacaaaaggctttagtg 530
Query: 181 ctccattgacctctgaatgaacgcactgagactcacagtcactcgaatttgctcagcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctccattgacctctgaatgaacgcactgagactcacagtcactcgaatttgctcagcctc 470
Query: 241 ctttgtttctggtggcattgggtgaatggagacttcagtgtgcatatgtgcagagaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctttgtttctggtggcattgggtgaatggagacttcagtgtgcatatgtgcagagaatga 410
Query: 301 caaagaacacaaatgtaactgcatcgcatctcacagggtgggaatctatgcaaggtctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caaagaacacaaatgtaactgcatcgcatctcacagggtgggaatctatgcaaggtctca 350
Query: 361 gagctgagaacaatagatagtgacaataatggtcacctcctgatacaaactctagatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gagctgagaacaatagatagtgacaataatggtcacctcctgatacaaactctagatgac 290
Query: 421 --aaaaaaaaaaaaagaacaaggaactcacttcaggggaaacaactggggttccacagta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aaaaaaaaaaaaaaagaacaaggaactcacttcaggggaaacaactggggttccacagta 230
Query: 479 tgaaacatgtccctttttgaagcatgaactac--------------------atatatat 518
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 229 tgaaacatgtccctttttgaagcatgaactacatatatatatatatatatatatatatat 170
Query: 519 atatatatatattcattttatttatatattttatatactatattaatactatatattaga 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 atatatatatattcattttatttatatattttatatactatattaatactatatattaga 110
Query: 579 ta 580
||
Sbjct: 109 ta 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 982
Length adjustment: 10
Effective length of query: 570
Effective length of database: 972
Effective search space: 554040
Effective search space used: 554040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
