BAC Information

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BAC

Clone NameMSMg01-178L22
Chromosome9 (Build37)
Map Location 75,910,611 - 75,910,885
singlet/doubletsinglet
Overlap geneHmgcll1
Upstream geneLOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071
Downstream geneGfral, Hcrtr2, C530008M07Rik, Tinag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178L22.T7 (MSMg01no178_l22.b1)MSMg01-178L22.TJ (MSMg01no178_l22.g1)
ACCAG372739AG372740
length739807
length of high quality
(start - end)
279 (385 - 663)229 (77 - 305)
definitionCHROMAT_FILE: MSMg01no178_l22.b1 PHD_FILE: MSMg01no178_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:36 2005CHROMAT_FILE: MSMg01no178_l22.g1 PHD_FILE: MSMg01no178_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCACATAGCAATACCCCTTCCATTTAATTTCAATAACCATGTAATAT
CATTTACCTTATATCAATTATCATCCACTCCTACCCAGAGGACAAATACT
GACAACATGGATGTATCTAACATGTATGAAAACAATTACATTCCTGTAAA
TTAATAAGCAAAACCAATATCATCATTTAGACCCTGCTTCTAAGGACAAT
ATACCATTTGATCTCTTCATATCAATCTTTTTACAGAGGATCATTAATGT
GTTACAGCAGTAATGCCAGTTTAGAAGAGAAAAAAATAAGACTATTTCAA
TATGGTTATTCTTTGTATAACACCACACCACACCAAATATGGCCTTAGTT
AATTTGGCCAGGATCCCTTTTGTGAAATGACACAGGCTATGTAAGGTAGA
CCATAAGCAGAGTGGACATACTTTGATTGGACTCATCCTGAGATACTTTC
TGTTGTCTGGACACATAATGATGTCTCTTAAGCCAACAATTTGAAAGTGC
CCCACCCCCTCTCCCTTTCTGTCCTTCTCCTTCTCCTTCTCCGTCTCCTT
CTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCCTCTCACTCTCTATTTATCATATATAAAAAATATCACTTTA
TTCTTTCTCTTTCTTTCCCATTCTTAACTTTTAATCTAN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACTTCATTCAGACCTATGTT
TGTGTTTCCTTGCAAATCCTTCAGGCACTTTCTCACTTTGAGTTTATTCT
TTATAATTTTACTGAGTTGTTTATGTCTTCCTTAAATTCCTCATTTTTTG
ATAAAGTTTATGACTTTTCTTTAAAATTCTATATCCTGGGGTTCATCTAT
AATTCTCACTGGAGAACATTTCTGTAGGATTGGTGGATTTTTGGTGGGGT
AGTGNNTTTNNTNNNTTTTTTTTTTTTTTTNNNNTTNNTTTTNTTNNNNN
NNNNNNNTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTNTNNNNNNNTTT
TTTTTTTTTTTTTTTTTTNTTTCCCCCCGAAAAAAAAAAAAAAATAATTT
TTGGTGGGGGGGCTTTTTCCTTTCTCTTTTTATTTTTTTTCCCACCTTTT
TTTCCTTTTCCGTTCTCTATATATTGTATCTCTAATCCTCACTTGTTGTT
CATATCTTATTATCCTCTTATTAATATTTATTTTATAATTCTTTTTATTA
TCGTCTCGCTGTTTTATTTTTTCGCGCATATTTACTTTATTTTATCCATT
TTTCCCATATATTTTTATTTCCCTCTCTTATACACCCCAATATTTTTATC
CATATATCCATGTGTATTTTCAATTTCGTAAGTATCACGTTTTCCCTAGG
CCGCTCCTTTTCCTTCTTTTTTTCTTCCACTATTAAATCTTATATTAAAA
TTAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_l22.b1 MSMg01no178_l22.b1 CHROMAT_FILE:
MSMg01no178_l22.b1 PHD_FILE: MSMg01no178_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:36 2005
         (279 letters)



>mm_chr9_75910512_75911190
          Length = 679

 Score =  478 bits (247), Expect = e-139
 Identities = 268/275 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatggccttagttaatttggccaggatcccttttgtgaaatgacacaggctatgtaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 374 aaatatggccttagttaatttggccaggatcccttttgtgaaatgacacaggttatgtaa 315

                                                                       
Query: 61  ggtagaccataagcagagtggacatactttgattggactcatcctgagatactttctgtt 120
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggtaaaccataagcaaagtggacatactttgattggactcatcctgagatactttctgtt 255

                                                                       
Query: 121 gtctggacacataatgatgtctcttaagccaacaatttgaaagtgccccaccccctctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtctggacacataatgatgtctcttaagccaacaatttgaaagtgccccaccccctctcc 195

                                                                       
Query: 181 ctttctgtccttctccttctccttctccgtctccttctccttctctctctctctctctct 240
           |||||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||
Sbjct: 194 ctttctgtccttctccttctccgtctccttctccttctctttctttctctctctctctct 135

                                              
Query: 241 ctctctctctctctctctctctctctctctctctc 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 134 ctctctctctctctctctctctctctctctctctc 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)