BAC Information

Click to search

BAC

Clone NameMSMg01-179H24
Chromosome9 (Build37)
Map Location 102,525,050 - 102,699,611
singlet/doubletdoublet
Overlap geneCep63, Anapc13, Amotl2, EG434510
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843
Downstream geneRyk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179H24.T7 (MSMg01no179_h24.b1)MSMg01-179H24.TJ (MSMg01no179_h24.g1)
ACCAG373267AG373268
length765758
length of high quality
(start - end)		291 (63 - 353)288 (66 - 353)
definitionCHROMAT_FILE: MSMg01no179_h24.b1 PHD_FILE: MSMg01no179_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:32 2005CHROMAT_FILE: MSMg01no179_h24.g1 PHD_FILE: MSMg01no179_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,525,050 - 102,525,339)(102,699,324 - 102,699,611)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTGTGT
TCCTTTCCTCAATACAGACTTAAGCAAAAAGTGTTTGATGATCTGCCACC
GCTTAGCACTAAGGCCAAATACTAACATAGGGCCAACAGGGCCCTCATTC
ACTGAGGGAATACTAGGAAGCTGTCAAAAGAGCATACATCTGTGGAGGGG
CCTGTGATAAGGTGAAAACAGCTACAAAGCAAGAAGAAGAAGTGTGTTCG
CCTTTGGGTGCTTATTTACTGAAGAACAAACTGAGAACTACTGCCTTTAC
GGAGGGAAGTGATCATGTGGGGGAGTCAGGGATAAAGCTAACTTTCTACA
GATTTGGTTTTTTCCCCCCCCCCCACCATGACAGTGCTTTCTAACTACCA
CACAGAGAGGCCCCCAACAAAAATAGAAAGAATCCTAGGACTGGGGAGGT
GAAGCAGGAAGATCTTAAGTTCCAGGTCATCCTTGACTACAAAAATACCC
TGCTAACGCAATACTAGGAGGAAATGATCATTTGAGCTGTTCTTGAACGC
TTCCTTCTATTCTATAAACCTAAAAATTAACTTTTATCCAATTACTTGTT
TATTTTTCGTTATACATTTTCGCCTATTTATCTTCCCTTCTTATCCGCCT
AATTTTTTTTATTCCTTTTTTTCACCCGCCCTACATGTCGAATCGTTTAT
TTCCATCACCCCTTCTTTTTACCCATCAATTAATTTTTTTTTTTTCCCTC
ACCTTTTTTATTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAGCATCACTCTGTGAAGCTCCCTCCAGTAGAGG
TGGTGTGGGTAGAAGCTGCAGGATGGATGGATGGACTATATCTATCCCAT
GTGCTGACCAATACCCACAAGGGTGTCAGGCCCAGAGCCTCATGTGCAAC
TCTTGATGCATATTTCTGGTTGAGAAGTTGGATGGTGACCCCCCAGCCCA
TGCAAACAGTATGATTTGGGGCAATGGGGGATGGGAGCCGAGGAGCTGCC
CAAAACTGGTGGTTCCCTTATCTGATAATAGCACACTGTCAAAGCTAGTG
CCGATTTTTTTTACCCCCCCACCCCCCCTTGGAGAGCCAAGTTATATTTG
TGATACTGATCCCCCCCCAAAAGAAAAAATGTCTAAGCGTGAATTATGGA
GTTCATTGGAGGTATGCAAATCTAAAGCTGATGACATTACTCTGTGGTGC
TCTCAATTTTCTTCTTCCTGCAACCCCGGCTGGCTGCATTTGCTACCCTC
CTTACTCTCTGATTTGTCTTATGGCCTTGCTTTTGATCTTTTATCACCAT
TTGCTTCCCCGTTTATCATTACGCTCTAATTTTTCTACTCCCCACATACT
TCTTATATATATTTATTTTATAACTTACCATGTTCTCACCCTCCCCCCCA
CTTCTTTTTTTTTCTTTCTTTTATTTTCCCCCCCCCTCTTGCACTTTTTC
TCCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_h24.b1 MSMg01no179_h24.b1 CHROMAT_FILE:
MSMg01no179_h24.b1 PHD_FILE: MSMg01no179_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:32 2005
         (291 letters)



>mm_chr9_102524850_102525540
          Length = 691

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagacttaagcaaaaagtgtttgatgatctgccaccgcttagcactaaggccaaatac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tacagacttaagcaaaaagtgtttgatgatctgccaccgcttagcactaaggtcaaatac 260

                                                                       
Query: 61  taacatagggccaacagggccctcattcactgagggaatactaggaagctgtcaaaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacatagggccaacagggccctcattcactgagggaatactaggaagctgtcaaaagag 320

                                                                       
Query: 121 catacatctgtggaggggcctgtgataaggtgaaaacagctacaaagcaagaagaagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catacatctgtggaggggcctgtgataaggtgaaaacagctacaaagcaagaagaagaag 380

                                                                       
Query: 181 tgtgttcgcctttgggtgcttatttactgaagaacaaactgagaactactgcctttacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgttcgcctttgggtgcttatttactgaagaacaaactgagaactactgcctttacgg 440

                                                             
Query: 241 agggaagtgatcatgtgggggagtcagggataaagctaactttctacaga 290
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggaagtgatcaggtgggggagtcagggataaagctaactttctacaga 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no179_h24.g1 MSMg01no179_h24.g1 CHROMAT_FILE:
MSMg01no179_h24.g1 PHD_FILE: MSMg01no179_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:32 2005
         (288 letters)



>mm_chr9_102699124_102699811
          Length = 688

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcatcactctgtgaagctccctccagtagaggtggtgtgggtagaagctgcaggatg 60
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 488 tcagcatcactctgtgaagcaccctccagtagaggtggtgtgggtagaggctgcaggatg 429

                                                                       
Query: 61  gatggatggactatatctatcccatgtgctgaccaatacccacaagggtgtcaggcccag 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gatggatggactatatctgtcccatgtgctgaccaatacccacaagggtgtcaggcccag 369

                                                                       
Query: 121 agcctcatgtgcaactcttgatgcatatttctggttgagaagttggatggtgacccccca 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 368 agcctcatgtgcaactcttgatgcagatttctggttgagaagttggatggtgacccccca 309

                                                                       
Query: 181 gcccatgcaaacagtatgatttggggcaatgggggatgggagccgaggagctgcccaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcccatgcaaacagtatgatttggggcaatgggggatgggagccgaggagctgcccaaaa 249

                                                           
Query: 241 ctggtggttcccttatctgataatagcacactgtcaaagctagtgccg 288
           ||||||||||||  ||||||||||||||||||||||||||||| ||||
Sbjct: 248 ctggtggttcccagatctgataatagcacactgtcaaagctagcgccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |