BAC Information

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BAC

Clone NameMSMg01-179K02
Chromosome9 (Build37)
Map Location 70,165,428 - 70,165,818
singlet/doubletsinglet
Overlap geneMyo1e
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneCcnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179K02.T7 (MSMg01no179_k02.b1)MSMg01-179K02.TJ (MSMg01no179_k02.g1)
ACCAG373354AG373355
length775751
length of high quality
(start - end)
456 (45 - 500)385 (76 - 460)
definitionCHROMAT_FILE: MSMg01no179_k02.b1 PHD_FILE: MSMg01no179_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:41 2005CHROMAT_FILE: MSMg01no179_k02.g1 PHD_FILE: MSMg01no179_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATTTGTCTCCTCCATTTCCCAGTGCTAGAATACATTCGTGTAA
TCACTACATTTAGCTTATGTTCGGGATAAAATCTGGGGCTTTGTGCACAC
TAGGGAAGGACTCATGCCCAGCCAGAGAAGCTTCCTAACGCCGAGCTGCA
AGCTCACCTCAAGAGATCAACTCCAGCCCTTAAGTGGGGTTCAGGCTACA
GCTCAGCTGGAAAAGTGCTTACCCAGCATCCTAGGGCCCTGCCTAGGATG
GGTTCCATCCCTAGCACCAAATAACCTGGGTGTGGTGATGCATTCCTAAA
ACCTGAGGTAGAGATAGGAAGTTCAGAAGTTTAAGGCTATCCTTTGGCAA
CTTAGTAAGATAGCCATCTTAAAAATGAAGATGAAGACAAAGATATAAAA
GATGAAGAGGAGAAGGAGGAGGAAGAGGATAAGAGGAGGAAGAAGAGTGG
GAGGAGAAAGACGTCTTTCCCCCCTTTCTCTCCCCGTTTTCCTCCCTCTT
TCGCCCTCTCCCCCGCTCTCCTCTCTTTTACTCCTTACTGCGGTGATGCC
CCCGCTTTCATCTCCATTCCCGTCGCCCTGCCCTTTATCTTGTATATCAC
ATCTTTCCATCCCACCCGCCCGTTTTATACCTACCCCGGCCCCCACCTTC
ACCTTCACCTTGTATTTTTCGTTTCCCCGCCCACTCTACCATACTCGGTC
TATATTTCCATTATTACCCCACACC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGA
AACCCTGGTCTCGAAAAAAAAAAAAAAAAAAAAAGAACCTCTTCCCACTT
TCCAAGGTTCTCTAGTCCTTGTTCACCCCAAGTAAAGAGTACTGTTTCGT
TGACCTTCGTCTACAAGAGCTGTTTTCTGTTTTGTTTTGTTTTGTTTTGT
TTTTCTTTTCCCCCCTCCCCCTTCTCCCCCTCCTGGCATTTACTGCCTGA
CCAGCATCCTCCTGACCCACCCCTTCCGGACTTCGATTCATCCTTTCCTG
TCTGGTGTGCATCAGACTCCAGACACCCCAAGGGAAAATTCAGACCACAG
AACTCAGCTCTGCTCCATCCTTCACTGCTTTGTGTGCTGTATCATACTGA
GGGAAGAATCGAAAAAATGGAGCCACAAGTAGTTATGACTGGAATAGAAC
AATGCATGTATGTATGTATGTATGTATGTATGTATGTATGCAGCTACTTT
CCTTCTTTCCTTTCTCTACTTTAATCATTTCCCACCTGTCCCCCCCTTTT
TTTCCCCCCCCACCCTTATCTCCAATTCCTCTCTTCCTTTTTTTTATTCT
TTCCTCCTCCTTATTTTTTACCGTCTTAACCTCCCTTCTCCCCTTTTTCG
TTTTCTTACCCCATTTTCTTCTTCTTTTTTCCCTTTTTTTTTTTTCTTGT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_k02.b1 MSMg01no179_k02.b1 CHROMAT_FILE:
MSMg01no179_k02.b1 PHD_FILE: MSMg01no179_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:41 2005
         (456 letters)



>mm_chr9_70165428_70166283
          Length = 856

 Score =  717 bits (371), Expect = 0.0
 Identities = 386/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatttgtctcctccatttcccagtgctagaatacattcgtgtaatcactaca 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gaattctttatttgtctgctccatttcccagtgctagaatacattcgtgtaatcactaca 332

                                                                       
Query: 65  tttagcttatgttcgggataaaatctggggctttgtgcacactagggaaggactcatgcc 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tttagcttatgttggggataaaatctggggctttgtgcacactagggaaggactcatgcc 272

                                                                       
Query: 125 cagccagagaagcttcctaacgccgagctgcaagctcacctcaagagatcaactccagcc 184
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 271 cagccagagaagcttcctaacgctgagctgcaagctcacctcaagagatcaacttcagcc 212

                                                                       
Query: 185 cttaagtggggttcaggctacagctcagctggaaaagtgcttacccagcatcctagggcc 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cttaagtggggttcagactacagctcagctggaaaagtgcttacccagcatcctagggcc 152

                                                                       
Query: 245 ctgcctaggatgggttccatccctagcaccaaataacctgggtgtggtgatgcattccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ctgcctaggatgggttccatccctagcaccaaataacctgggtgtggtgatgcattccta 92

                                                                       
Query: 305 aaacctgaggtagagataggaagttcagaagtttaaggctatcctttggcaacttagtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  aaacctgaggtagagataggaagttcagaagtttaaggctatcctttggcaacttagtaa 32

                                          
Query: 365 gatagccatcttaaaaatgaagatgaagaca 395
           |||||||||||||||||||||||||||||||
Sbjct: 31  gatagccatcttaaaaatgaagatgaagaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)