BAC Information

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BAC

Clone NameMSMg01-179N17
Chromosome9 (Build37)
Map Location 8,947,997 - 8,948,349
singlet/doubletsinglet
Overlap genePgr
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
Downstream gene9030420J04Rik, Cntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179N17.T7 (MSMg01no179_n17.b1)MSMg01-179N17.TJ (MSMg01no179_n17.g1)
ACCAG373509AG373510
length730732
length of high quality
(start - end)
644 (63 - 706)354 (375 - 728)
definitionCHROMAT_FILE: MSMg01no179_n17.b1 PHD_FILE: MSMg01no179_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:58 2005CHROMAT_FILE: MSMg01no179_n17.g1 PHD_FILE: MSMg01no179_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGATCCGCGGAATTCCTTGT
TCTACCCAAAATTGGTTATTGCAGGATATTGATATTTGACCTATTGCATA
CCATCATTTTAAATAAAATTTATACTCATCCTAAGATAAGTTAAAAATTG
CGTATACATGCTTTTGTATCTTCTATAAGTTCATGCATGCTTACATCCCA
TTTACTGTATTTAAAAACAACCCTTCTATGGGAGAAAAGTATATGTAAAT
TAAATCACATGCTTATCCTGTTTCAGCACAGATAATTAAATTGTGTGCTG
AAGATGGTGTTTAAAAATGTTGAACAATCAAACTTTAAGTTGTATATTAA
TAGTTAATATTATATCTCAGAGCTTGCAATTGCTTATGCAACTTATAAGA
AAAAATACCGCTTCTTTAAGAAAATTGTTTTTGGGCAGTTAAGAAATCGT
CCTAAGTTGCCTGGAAAAGACCCCCAGGATTTGTTTTTGTGTTATAGAGG
TTTACATAAAGCTTTAACTAATAAAGATTACAGATAGCTCCTGAAAAGAT
ACAAACTCAGGGTTCTTATATTTATTTGGGTTTTAAAAGATAGTTATTTG
TAGAGACAACTTAAAGACTTTCTCTAATTTCTGATTAATAAATAAATAAA
TTATACACCAGTGACTATAATGACTTTTCAAGCATTCTAGTTACAATCTC
TCTTTAAGAAAAACAAATGAAAGTATAATN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTGTTTGCAAATATGGCTTAAAGAGAGCAGAGT
CCACACAAAATTTTGCTCATCTTAATGCTGCCCTTGAGCATTATTAATAG
AAACTGAGAGAATCATAAAGGTGTGACCATTTCCATTTGCCACACATAAA
TTATGTTCTGCAGCACTTGAAAAGTTGCTACCAAATTCAATACATATATT
TCTTCTCATTATTTCTTCAACAATGTGTGGAGGTCAAAATATCTTGATTT
ATAAACATTTAAACTTAAAAACAGCTTTTATCTTCAATAAATAAATGTTC
TTTTTATTTGCTTTCCTTCCCACCTTTACTAGCTAACTATAAAAATCTTC
TTAAAAATAAAGAGCTTCCAAAAATACAAGCAAGAGAAATAATGACCCAT
AGCAATGGTGGTCAAGGAAAGCACAATTTCCAGATAATGGAAAGAGAAAA
GCATCACACCGCTAAATGCCAATTTTAAAAACAGAGTTATTTTATCAATG
CTACTATGACATTTACTTAGTAAAGATCTATCAAATTTAATAGCCACTTC
ACATTAAGTTTTAAATATTCAAAACTTTTTTCTGAAGGAAAACATTACCT
GTCCAAGGCCTGTCAGCTACAGTAAAGCAAATGAAAAGCTGGGTAGTCTG
ACTCATCTGTCAGATCCGTTTGAAGGTCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_n17.g1 MSMg01no179_n17.g1 CHROMAT_FILE:
MSMg01no179_n17.g1 PHD_FILE: MSMg01no179_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:58 2005
         (354 letters)



>mm_chr9_8947797_8948549
          Length = 753

 Score =  594 bits (307), Expect = e-174
 Identities = 343/355 (96%), Gaps = 3/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactagctaactataaaaatcttcttaaaaataaagagcttccaaaaatacaagcaag 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 553 tttactagctaactat-aaaatcttcttaaaaataaagagcttccaaaaatacaagcgag 495

                                                                       
Query: 61  agaaataatgacccatagcaatggtggtcaaggaaagcacaatttccagataatggaaag 120
           ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 494 agaaatattgacccatagcaatggtggtcaaggaaagca-gatttccagataatggaaag 436

                                                                       
Query: 121 agaaaagcatcacaccgctaaatgccaattttaaaaacagagttattttatcaatgctac 180
           ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 435 agaaaagcatcgcaccgctaaacgccaattttaaaatcagagttattttatcaatgctac 376

                                                                       
Query: 181 tatgacatttacttagtaaagatctatcaaatttaatagccacttcacattaagttttaa 240
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 375 tatgacatttacttagtaaagatctatcaaatttgatagccacttcacactaagttttaa 316

                                                                       
Query: 241 atattcaaaactttttt-ctgaaggaaaacattacctgtccaaggcctgtcagctacagt 299
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atattctaaactttttttctgaaggaaaacattacctgtccaaggcctgtcagctacagt 256

                                                                  
Query: 300 aaagcaaatgaaaagctgggtagtctgactcatctgtcagatccgtttgaaggtc 354
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaagcaaatgaaaagctgggtagtctgactcatctgtcagatccgtttgaaggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 753
Length adjustment: 9
Effective length of query: 345
Effective length of database: 744
Effective search space:   256680
Effective search space used:   256680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)