BAC Information

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BAC

Clone NameMSMg01-180D02
Chromosome9 (Build37)
Map Location 122,168,908 - 122,169,533
singlet/doubletsinglet
Overlap geneTmem16k
Upstream geneUlk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk
Downstream geneAbhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180D02.T7 (MSMg01no180_d02.b1)MSMg01-180D02.TJ (MSMg01no180_d02.g1)
ACCAG373743AG373744
length688692
length of high quality
(start - end)
641 (44 - 684)189 (76 - 264)
definitionCHROMAT_FILE: MSMg01no180_d02.b1 PHD_FILE: MSMg01no180_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:22 2005CHROMAT_FILE: MSMg01no180_d02.g1 PHD_FILE: MSMg01no180_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGGA
TTTGCGTCCTACCGTCATTGGCGGCAGCTCAAGGGTAGGTGGGCATGTAT
GCATACCTGGAAAAAAGAACCAGGATAGAGTTTAAAAGGTCATAGGTCAT
TCAGTATTTGTCCATGCAAGCAAATGTGTTGTGTTATCCTGTGGGAAGAG
GTCTGGACCTTAACTTAGTAGATGCAATGTTGTTAAGTTTCTGTCTGTTC
TCTAGTAACAGCGGCCAGTTTTCTCGGGGCTTTCTTTGTATTGGGTCATA
TGTTCTGATATCCACAGCCACACAAGACAGCAGCCAATCCCTACAGTAGG
GCAGGAGGCTGCGAAGCAGGAGGTAGCATGGATGGCCTGAGGTCAGGTAG
TGTGTACTAGTGAAGGCCAGTCCTCACTGCAGGAGTCCCTCAAGATGTTT
TCTGTTCCTGCTTCTGTTGTCTTGGGGCCACTATACAATGTCTCTATTTC
TAGGTGAGGCTAGTATCTGAATTCAAGTTGTTCCTGTCCAAGGCCCCACA
CAGAGCTGTGCTGCTTCCTCCGTAGCCATTTTACAGTACAGTAGAGGCTC
TTTTGTGGGATAGCTGGGTGTAGACTCATTTGCCAACACTTCCCAGATTT
CTTTTTCCCATATCTAGAANAAAAAATCCCCAACCACA
AATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGTAGCGGCCTGTACTGGTTGCT
TGTTTACCTTGGCTGACAGTTTAAAGGAGGCATGGTATGTTTTGGCTCGA
GAATAAAGTCCACCATAGTGGGGAAGGCATGGAGGTGGGAGCTCGGGATA
GCCATAGATTGTCATATGCATCTAGAGTCAGGAACCAGAGTGTGTGTGCT
GCTGCTCAGCTCTGAAAGATCCCCTCATAATTTCCCCAAAGCGTAACCAT
GTGTGAATAAATTTTGAGCTAGTACGGTTGCAGCCACGAGTAAGTCTTCC
CTTGTTATTGTGTAGCCAGAATGCCGCAAAACTTCCATGCCTAAGCGAAC
TGTTGAGAGTACGCTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGT
CCCAATCTTGTTTCTGAGAATGAATGGCCGCCTGCCAACATGTTAGTTGA
AGCATCAGGGCGATTAGCAGCCTGATATCCAAACGCTCTGAGCTGCTCGT
TCGGTTATGGGGGACGCCTAGTCCGCAAGTAGGCCTTTTCAAGTCTCGGA
AGGTTTCTTTAATCTGCATTTGCTTCGAAGAAATAATAGACGCGGGCTTC
GCCGTTTGGAATTGACATACTTACCATAATCTGTATCATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_d02.b1 MSMg01no180_d02.b1 CHROMAT_FILE:
MSMg01no180_d02.b1 PHD_FILE: MSMg01no180_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:22 2005
         (641 letters)



>mm_chr9_122168701_122169741
          Length = 1041

 Score = 1098 bits (568), Expect = 0.0
 Identities = 613/628 (97%), Gaps = 2/628 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gatttgcgtcctaccgtcattggcggcagctcaagggtaggtgggcatgtatgcatacct 65
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 833 gatttgcgtcccaccgtcattggcggcagctcaagggtaggtgggcatgtatgcatgcct 774

                                                                       
Query: 66  ggaaaaaagaaccaggatagagtttaaaaggtcataggtcattcagtatttgtccatgca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaaaaaagaaccaggatagagtttaaaaggtcataggtcattcagtatttgtccatgca 714

                                                                       
Query: 126 agcaaatgtgttgtgttatcctgtgggaagaggtctggaccttaacttagtagatgcaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 713 agcaaatgtgttgtgttatcctgtgggaagaggtctggaccttaacttagtagatgcaac 654

                                                                       
Query: 186 gttgttaagtttctgtctgttctctagtaacagcggccagttttctcggggctttctttg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gttgttaagtttctgtctgttctctagtaacagcggccagttttctcggggctttctttg 594

                                                                       
Query: 246 tattgggtcatatgttctgatatccacagccacacaagacagcagccaatccctacagta 305
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 593 tattgggtcatatgttctgatatacacagccacacaaggcagcagccaatccctacagta 534

                                                                       
Query: 306 gggcaggaggctgcgaagcaggaggtagcatggatggcctgaggtcaggtagtgtgtact 365
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 533 gggcaggaggctgcaaagcaggaggtagcatggatggcctgaggtcaggtagtgtatact 474

                                                                       
Query: 366 agtgaaggccagtcctcactgcaggagtccctcaagatgttttctgttcctgcttctgtt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 473 agtgaaggccagtcctcactgcaggagtccctcaagatgttttctgttcctacttctgtt 414

                                                                       
Query: 426 gtcttggggccactatacaatgtctctatttctaggtgaggctagtatctgaattcaagt 485
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 413 gtcttggggccactatacaatgtctctatttctaggtgaggctagaatctgaattcaagt 354

                                                                       
Query: 486 tgttcctgtccaaggccccacacagagctgtgctgcttcctccgtagccattttacagta 545
           |||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 353 tgttcctgtccaaggctccacacagagatgtgctgcttcctgcatagccattttacagta 294

                                                                       
Query: 546 cagtagaggctcttttgtgggatagctgggtgtagactcatttgccaacacttcccagat 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cagtagaggctcttttgtgggatagctgggtgtagactcatttgccaacacttcccagat 234

                                       
Query: 606 ttctttttcccatatctagaanaaaaaa 633
           |||||||||||||||||| || ||||||
Sbjct: 233 ttctttttcccatatcta-aa-aaaaaa 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)