MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-180J24
Chromosome	9 (Build37)
Map Location	103,542,303 - 103,542,793
singlet/doublet	singlet
Overlap gene	Tmem108
Upstream gene	Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, 4932413F04Rik
Downstream gene	EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921, Cpne4
Link	Open Mouse BAC browser

Click to get alignment info.

name	Amotl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56332 MGI:1929286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434510 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434510 MGI:3645308
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ryk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20187 MGI:101766
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Slco2a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24059 MGI:1346021
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab6b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270192 MGI:107283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Srprb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20818 MGI:102964
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22041 MGI:98821
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1300017J02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71775 MGI:1919025
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Topbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235559 MGI:1920018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdv3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:321022 MGI:2448759
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Bfsp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107993 MGI:1333828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem108 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81907 MGI:1932411
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932413F04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319215 MGI:2441690
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs

name	EG384978 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384978 MGI:3645790
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Nphp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74025 MGI:1921275
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube1dc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66663 MGI:1913913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acad11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102632 MGI:2143169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccrl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:252837 MGI:2181676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hmgb1-rs16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15296 MGI:104765
definition	gene_synonym : Hmg1-rs16 note : high mobility group box 1, related sequence 16 pseudo : _no_value

name	Acpp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56318 MGI:1928480
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100040921 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Cpne4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74020 MGI:1921270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amotl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119120837 GeneID:56332 MGI:1929286
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : angiomotin like 2 transcript_id : NM_019764.2

name	EG434510 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386580 GeneID:434510 MGI:3645308
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG434510 transcript_id : NM_001034892.2

name	Ryk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110681699 GeneID:20187 MGI:101766
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : receptor-like tyrosine kinase transcript_id : NM_013649.3

name	Ryk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110681701 GeneID:20187 MGI:101766
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : receptor-like tyrosine kinase transcript_id : NM_001042607.1

name	Slco2a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802538 GeneID:24059 MGI:1346021
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier organic anion transporter family, member 2a1 transcript_id : NM_033314.3

name	Rab6b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129903 GeneID:270192 MGI:107283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB6B, member RAS oncogene family transcript_id : NM_173781.4

name	Srprb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375873 GeneID:20818 MGI:102964
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : signal recognition particle receptor, B subunit transcript_id : NM_009275.4

name	Trf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129942 GeneID:22041 MGI:98821
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transferrin transcript_id : NM_133977.2

name	1300017J02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801564 GeneID:71775 MGI:1919025
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1300017J02 gene transcript_id : NM_027918.2

name	Topbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130322 GeneID:235559 MGI:1920018
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : topoisomerase (DNA) II beta binding protein transcript_id : NM_176979.5

name	Cdv3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28461293 GeneID:321022 MGI:2448759
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carnitine deficiency-associated gene expressed in ventricle 3 transcript_id : NM_175833.1

name	Cdv3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342196 GeneID:321022 MGI:2448759
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carnitine deficiency-associated gene expressed in ventricle 3 transcript_id : NM_175565.2

name	Bfsp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131084 GeneID:107993 MGI:1333828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : beaded filament structural protein 2, phakinin transcript_id : NM_001002896.2

name	Tmem108 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381914 GeneID:81907 MGI:1932411
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 108 transcript_id : NM_178638.3

name	4932413F04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260309 GeneID:319215 MGI:2441690
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs product : RIKEN cDNA 4932413F04 gene transcript_id : XM_001004814.2

name	Nphp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50878276 GeneID:74025 MGI:1921275
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nephronophthisis 3 (adolescent) transcript_id : NM_028721.2

name	Ube1dc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803582 GeneID:66663 MGI:1913913
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-activating enzyme E1-domain containing 1 transcript_id : NM_025692.2

name	Acad11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803267 GeneID:102632 MGI:2143169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-Coenzyme A dehydrogenase family, member 11 transcript_id : NM_175324.3

name	Ccrl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21746186 GeneID:252837 MGI:2181676
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-C motif) receptor-like 1 transcript_id : NM_145700.1

name	Acpp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:92373432 GeneID:56318 MGI:1928480
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acid phosphatase, prostate transcript_id : NM_207668.2

name	Acpp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46575783 GeneID:56318 MGI:1928480
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acid phosphatase, prostate transcript_id : NM_019807.2

name	Cpne4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037332 GeneID:74020 MGI:1921270
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : copine IV transcript_id : NM_028719.1

name	Amotl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119120838 GeneID:56332 MGI:1929286
definition	GO_component : GO:0005923 - tight junction [Evidence IDA] GO_function : GO:0042802 - identical protein binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : angiomotin-like protein 2; Leman coiled-coil protein product : angiomotin like 2 protein_id : NP_062738.2

name	EG434510 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702248 GeneID:434510 MGI:3645308
definition	codon_start : 1 product : hypothetical protein LOC434510 protein_id : NP_001030064.1

name	Ryk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110681700 GeneID:20187 MGI:101766
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0042813 - Wnt receptor activity [Evidence IPI]; GO:0017147 - Wnt-protein binding [Evidence IPI] GO_process : GO:0007409 - axonogenesis [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0048705 - skeletal morphogenesis [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; growth factor receptor product : receptor-like tyrosine kinase isoform 1 protein_id : NP_038677.3

name	Ryk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110681702 GeneID:20187 MGI:101766
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0042813 - Wnt receptor activity [Evidence IPI]; GO:0017147 - Wnt-protein binding [Evidence IPI] GO_process : GO:0007409 - axonogenesis [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0048705 - skeletal morphogenesis [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; growth factor receptor product : receptor-like tyrosine kinase isoform 2 protein_id : NP_001036072.1

name	Slco2a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625831 CCDS:CCDS23448.1 GeneID:24059 MGI:1346021
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0015132 - prostaglandin transporter activity [Evidence IDA] GO_process : GO:0015732 - prostaglandin transport [Evidence IDA] codon_start : 1 note : solute carrier family 21 (prostaglandin transporter), member 2 product : solute carrier organic anion transporter family, member 2a1 protein_id : NP_201571.2

name	Rab6b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424655 CCDS:CCDS23449.1 GeneID:270192 MGI:107283
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : RAB6B, member RAS oncogene family protein_id : NP_776142.1

name	Srprb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678137 CCDS:CCDS23450.1 GeneID:20818 MGI:102964
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005786 - signal recognition particle (sensu Eukaryota) [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : signal recognition particle receptor, B subunit protein_id : NP_033301.1

name	Trf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20330802 CCDS:CCDS23451.1 GeneID:22041 MGI:98821
definition	GO_component : GO:0030139 - endocytic vesicle [Evidence IDA] [Evidence ISS]; GO:0005768 - endosome [Evidence IDA] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : hypotransferrinemia with hemochromatosis product : transferrin protein_id : NP_598738.1

name	1300017J02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313642 CCDS:CCDS23452.1 GeneID:71775 MGI:1919025
definition	codon_start : 1 product : hypothetical protein LOC71775 protein_id : NP_082194.1

name	Topbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559817 CCDS:CCDS23453.1 GeneID:235559 MGI:1920018
definition	GO_component : GO:0000794 - condensed nuclear chromosome [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0007131 - meiotic recombination [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : topoisomerase (DNA) II beta binding protein protein_id : NP_795953.2

name	Cdv3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28461294 CCDS:CCDS23454.1 GeneID:321022 MGI:2448759
definition	codon_start : 1 note : isoform CDV3B is encoded by transcript variant CDV3B product : carnitine deficiency-associated gene expressed in ventricle 3 isoform CDV3B protein_id : NP_787027.1

name	Cdv3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28202071 GeneID:321022 MGI:2448759
definition	codon_start : 1 note : isoform CDV3A is encoded by transcript variant CDV3A product : carnitine deficiency-associated gene expressed in ventricle 3 isoform CDV3A protein_id : NP_780774.1

name	Bfsp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50872159 GeneID:107993 MGI:1333828
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005882 - intermediate filament [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005212 - structural constituent of eye lens [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IMP]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 product : beaded filament structural protein 2, phakinin protein_id : NP_001002896.1

name	Tmem108 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30519983 CCDS:CCDS23455.1 GeneID:81907 MGI:1932411
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : hypothetical protein LOC81907 protein_id : NP_848753.1

name	4932413F04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386548 GeneID:319215 MGI:2441690
definition	codon_start : 1 product : hypothetical protein LOC319215 protein_id : XP_001004814.1

name	Nphp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50878277 GeneID:74025 MGI:1921275
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0006629 - lipid metabolism [Evidence IMP] codon_start : 1 exception : unclassified translation discrepancy note : polycystic kidney disease product : nephrocystin 3 protein_id : NP_082997.2

name	Ube1dc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313374 CCDS:CCDS23457.1 GeneID:66663 MGI:1913913
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin-activating enzyme E1-domain containing 1 protein_id : NP_079968.1

name	Acad11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74271799 CCDS:CCDS23458.1 GeneID:102632 MGI:2143169
definition	GO_function : GO:0003995 - acyl-CoA dehydrogenase activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : acyl-Coenzyme A dehydrogenase family, member 11 protein_id : NP_780533.2

name	Ccrl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21746187 CCDS:CCDS23459.1 GeneID:252837 MGI:2181676
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016493 - C-C chemokine receptor activity [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : chemokine receptor CCX-CKR; chemokine receptor CCR11; chemokine (C-C) receptor-like 1 product : chemokine (C-C motif) receptor-like 1 protein_id : NP_663746.1

name	Acpp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46575782 CCDS:CCDS23460.1 GeneID:56318 MGI:1928480
definition	GO_function : GO:0003993 - acid phosphatase activity [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; lysosomal acid phosphatase product : acid phosphatase, prostate isoform 1 protein_id : NP_997551.1

name	Acpp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46575784 GeneID:56318 MGI:1928480
definition	GO_function : GO:0003993 - acid phosphatase activity [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; lysosomal acid phosphatase product : acid phosphatase, prostate isoform 2 protein_id : NP_062781.2

name	EG384978 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384978
definition	number : 1 pseudo : _no_value

name	EG384978 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384978
definition	number : 2 pseudo : _no_value

name	LOC100040921 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040921
definition	number : 3 pseudo : _no_value

name	LOC100040921 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040921
definition	number : 2 pseudo : _no_value

name	LOC100040921 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040921
definition	number : 1 pseudo : _no_value

clone name	MSMg01-117B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145N01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031J05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-180J24.T7 (MSMg01no180_j24.b1)	MSMg01-180J24.TJ (MSMg01no180_j24.g1)
ACC	AG374049	AG374050
length	752	760
length of high quality (start - end)	496 (32 - 527)	239 (113 - 351)
definition	CHROMAT_FILE: MSMg01no180_j24.b1 PHD_FILE: MSMg01no180_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:55 2005	CHROMAT_FILE: MSMg01no180_j24.g1 PHD_FILE: MSMg01no180_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:55 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTCCATT CCCAACAGAGGAACAGCTTGCTGCTGTGCCTACTACAGTAATAAATAAAT GCTATCTCTGCCAACTACATCTTCTCATTTATGGGCTCCATCTGTCTGTC AGTGTGTCTTTCTGTCTATCAGTCATTGACCTCCATTCCCAACAAATACG GAGACCCAAGCAGGCTCTCTGCTTCTACGTGCTTACCCTTGACAGTAGGG AAACCATCCTCTACTTTATCTTCTAAGTCGTCTTCCAGAGAAGAGCAAGT GAAAGGAGGCAGGAATAGAGGAGTGGGCACCTGACCCGTTGTGTAAATGC GTGGGTGGCATCCCAGGCACCCCCACTGTAGCATTAGGTTTGTATACACT CCTGCCTGTAGCAAACAAGAAGGGTACCAAGGCAGAGTTGAGAGTCTGTG TTCACTAACTCATTCTTCTCTCCCCTGGATAGGTGAGGTACATGGAATTC TGTTGGGACCTGGAAGTCAGTCAACTTACACTTGTAGACAAATTCTGAGC CCCTGGTAGGCTAACACTCCAGCTCACTTCCAAATGGTATTAAGATTGGT TAGGAATAAGTATCTCTTTATTGTATCACCTGCCGACAACTTAACATTTT TGTTATAGCACACTACATGTCGCTTACTTTGTACTTACAACTACTATTTT GACTCATTTCCACAACCCGTTTTGTTATATTGTTTTAAAATACCTATCTC CG	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGGTAATAAAGTGTT CCCACTACACACACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTC TTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCCGTAAAACAGACTGTTG AGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAACGGTGG TAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTG AATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGTGTTCCCGTAT TTTTTACTGTCGACCACCCCCATTCAACTGCGTGAATTCAGAACTCTTCA GCTGGGCAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGTC TTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAA ATAGCTTTACAAGGTACGTCTGGCCTTGAACTTTCTAATGAAATTCAAGA CAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCC TTGAACTTTCTCTAGTGTTAGGAGCCTTTTTGTGCCTTTTCACATGTTAT CCCGCGTTTACTCTCTGGCTATAAAATTCCGCTATGAATCTCCCTCCCTC TCTACTCCCACTTTTTCTGGCCATTAGTATCTTCTTATATATTATTTACT CTCTTCTCCN
quality values	Open. Hide. 12 12 21 11 8 8 15 15 29 30 44 27 20 19 19 19 22 25 11 11 11 10 11 11 22 23 28 28 28 30 30 31 41 53 57 38 42 42 42 53 53 59 59 59 42 37 36 34 34 34 31 31 20 20 18 31 32 46 46 59 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 57 57 53 53 53 53 53 53 57 59 59 57 57 53 53 50 50 50 50 47 47 35 21 13 8 8 8 11 10 11 11 11 22 27 34 47 50 50 50 44 53 53 38 38 42 53 53 53 53 53 53 53 53 57 57 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 54 54 57 59 59 57 68 57 57 57 57 57 68 68 68 68 57 59 59 44 43 33 31 31 35 35 43 43 50 50 50 54 57 54 54 48 59 59 59 57 57 57 57 57 57 57 57 57 57 59 57 57 68 68 57 57 57 57 47 47 43 39 39 32 32 30 32 30 28 32 40 43 57 57 59 59 57 48 48 48 59 59 57 47 48 48 48 48 48 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 47 47 36 24 24 9 9 9 9 9 9 9 19 26 30 37 43 43 43 43 43 43 43 47 47 48 48 43 40 39 40 48 48 43 48 46 43 43 46 46 46 48 46 57 43 46 47 48 48 47 59 37 37 37 47 59 59 57 68 68 57 57 48 48 48 48 59 59 68 68 68 68 59 59 59 57 57 59 57 57 48 48 48 48 48 57 57 48 48 48 57 42 47 35 39 39 43 39 34 34 38 38 50 47 59 48 59 46 46 41 41 36 39 37 37 25 25 28 34 30 30 30 34 34 28 16 17 11 11 11 21 14 22 22 22 15 23 12 12 11 12 12 18 16 16 19 11 11 12 24 23 28 23 23 23 28 28 26 18 14 14 14 15 12 14 10 13 8 10 10 10 15 13 15 18 11 11 9 11 9 12 17 19 31 23 28 28 34 21 9 9 10 11 15 17 11 11 10 10 10 18 10 12 15 13 13 9 9 9 9 10 10 8 8 8 8 8 8 15 10 15 12 15 15 13 12 10 11 11 13 10 10 10 9 11 12 8 8 8 8 8 8 8 10 13 16 13 10 11 11 14 12 10 10 11 10 8 10 8 8 8 8 10 10 11 10 10 8 8 7 6 8 8 8 6 10 10 13 16 8 8 8 6 6 7 6 8 8 11 12 12 12 18 15 8 8 8 8 8 8 15 19 19 10 11 11 10 14 15 15 18 18 14 10 10 8 8 8 6 6 8 8 10 10 9 10 9 9 11 16 12 11 11 9 9 10 10 15 12 12 10 8 8 8 8 8 8 9 10 10 10 10 8 8 6 6	Open. Hide. 37 41 41 41 37 37 40 40 48 48 59 59 59 59 59 57 57 57 57 57 48 48 48 43 37 32 32 32 42 42 54 54 54 54 54 47 47 47 68 50 51 68 68 68 68 68 68 51 50 50 50 50 50 59 59 59 50 50 50 50 50 50 50 50 50 68 68 68 68 51 51 47 47 47 50 68 68 59 59 50 53 53 57 57 50 57 57 57 53 53 57 57 57 57 53 53 50 50 50 50 37 37 21 21 8 8 8 13 15 16 10 10 10 15 25 30 59 46 50 50 50 50 59 36 53 36 36 36 36 50 50 50 57 57 57 57 57 53 53 53 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 59 59 57 57 57 50 51 51 51 51 50 57 57 57 59 59 59 57 68 68 68 68 68 68 68 59 59 47 40 41 37 47 47 42 39 43 48 43 48 48 57 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 30 28 13 9 9 9 10 11 11 15 14 12 16 11 11 9 10 10 8 8 10 10 10 10 15 13 12 11 13 12 30 30 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 50 50 50 50 41 39 28 22 10 10 10 10 10 14 23 23 24 18 16 12 15 12 19 13 12 12 18 15 20 20 30 32 43 43 57 59 43 43 25 25 25 40 34 43 43 43 47 59 59 59 48 48 48 48 57 57 57 57 48 48 48 57 57 57 57 57 57 57 59 59 59 59 57 57 44 43 37 37 39 39 43 46 43 43 42 44 32 31 20 28 28 33 33 43 39 40 29 23 23 20 24 28 28 37 37 43 43 43 48 48 48 48 48 32 32 20 32 28 37 37 47 46 46 41 34 36 19 15 13 28 28 37 37 40 40 40 43 46 46 46 43 43 59 39 29 25 27 30 30 22 28 28 28 37 35 32 28 22 22 26 32 24 18 13 13 13 22 17 22 24 37 37 37 31 28 22 19 19 31 28 19 19 8 8 8 17 25 34 23 26 20 28 19 19 19 24 23 30 22 21 18 18 18 13 18 23 24 20 24 15 10 10 10 17 16 20 17 14 9 9 10 10 10 10 11 16 17 17 16 11 11 12 18 14 12 11 10 10 11 17 22 30 27 14 13 12 12 12 24 24 16 14 14 12 17 10 9 9 9 9 9 12 16 11 8 8 8 8 10 9 10 10 10 10 10 9 12 14 10 10 8 10 10 12 10 16 13 10 8 8 8 8 8 8 8 8 10 8 10 10 10 10 10 6 6 8 6 8 8 11 10 10 6 6 8 10 9 12 12 10 10 10 10 8 8 6 7 8 8 9 8 8 8 8 8 8 10 10 12 12 12 9 9 9 9 9 9 10 10 10 9 9 9 10 12 13 23 15 8 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no180_j24.b1 MSMg01no180_j24.b1 CHROMAT_FILE:
MSMg01no180_j24.b1 PHD_FILE: MSMg01no180_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:55 2005
         (496 letters)



>mm_chr9_103542099_103542993
          Length = 895

 Score =  897 bits (464), Expect = 0.0
 Identities = 485/492 (98%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttccattcccaacagaggaacagcttgctgctgtgcctactacagtaataaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttccattcccaacagaggaacagcttgctgctgtgcctactacagtaataaa 264

                                                                       
Query: 65  taaatgctatctctgccaactacatcttctcatttatgggctccatctgtctgtcagtgt 124
           ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaatgctatcactgttaactacatcttctcatttatgggctccatctgtctgtcagtgt 324

                                                                       
Query: 125 gtctttctgtctatcagtcattgacctccattcccaacaaatacggagacccaagcaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctttctgtctatcagtcattgacctccattcccaacaaatacggagacccaagcaggc 384

                                                                       
Query: 185 tctctgcttctacgtgcttacccttgacagtagggaaaccatcctctactttatcttcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctctgcttctacgtgcttacccttgacagtagggaaaccatcctctactttatcttcta 444

                                                                       
Query: 245 agtcgtcttccagagaagagcaagtgaaaggaggcaggaatagaggagtgggcacctgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 agtcgtcttccagagaagagcaagtgaaaggaggcaggaatagaggagtaggcacctgac 504

                                                                       
Query: 305 ccgttgtgtaaatgcgtgggtggcatcccaggcacccccactgtagcattaggtttgtat 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 ccgttgtgtaaatgcgtgggtggcatcccaggcacccc-actgtagcattaggtttgtat 563

                                                                       
Query: 365 acactcctgcctgtagcaaacaagaagggtaccaaggcagagttgagagtctgtgttcac 424
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acactcctgtttgtagcaaacaagaagggtaccaaggcagagttgagagtctgtgttcac 623

                                                                       
Query: 425 taactcattcttctctcccctggataggtgaggtacatggaattctgttgggacctggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taactcattcttctctcccctggataggtgaggtacatggaattctgttgggacctggaa 683

                       
Query: 485 gtcagtcaactt 496
           ||||||||||||
Sbjct: 684 gtcagtcaactt 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space:   430110
Effective search space used:   430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information