BAC Information

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BAC

Clone NameMSMg01-181I03
Chromosome9 (Build37)
Map Location 49,025,825 - 49,203,585
singlet/doubletdoublet
Overlap geneEG235327, Drd2
Upstream geneD930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5
Downstream geneAnkk1, Ttc12, Ncam1, EG667975, LOC100042806, LOC100043346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181I03.T7 (MSMg01no181_i03.b1)MSMg01-181I03.TJ (MSMg01no181_i03.g1)
ACCAG374664AG374665
length727725
length of high quality
(start - end)
568 (44 - 611)530 (75 - 604)
definitionCHROMAT_FILE: MSMg01no181_i03.b1 PHD_FILE: MSMg01no181_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:59 2005CHROMAT_FILE: MSMg01no181_i03.g1 PHD_FILE: MSMg01no181_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,203,025 - 49,203,585)(49,025,825 - 49,026,354)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCCAAACTATCCCTTTTTTTATTCCTGGTTCTAGCGATCTTATAATG
TTAGGGCAAGCTTCTGTTCTTCTAGCAGATGGTTTAATAAATGAAAGTTA
CATTTTTCAAGTGTAATAACATAAGTTTCAAAAGAGCTAACTCATCCATT
CTTTCATTTGCTCAACACACTCACATGCACAGTTAGTTAGGAGTTCCAGA
GTCTTGTGGTAGAAACAGAAATGAGCATTCATTAATTCTTGATGCTTTAA
CATTTATTAATCACTTTACATGTGGCTAAAAAACACAGGCAAACAAAATA
TACATGGTTTTGTATCTTACATTCTAGAAGAAATAATAGCTATTGTGCTC
AGCATCACACATCTGTAACTCCAGTTGCTCCAAATGCTGACGCACAGGGA
GAGAAAATTCAAGGCTAGCCTGAGCTACAGAGTGAACTCAAAGTCAGCTT
GACAACTTAGTCAAACGCTGTCTCAAAACCGAAAAAAAAATAAAAACTAA
ACTAAAAAGAGAGGTTTTGGTATATTTCAGTTGTATAGTATGCTTGCCTA
GTATACAGAAGGCCCTGTGTCCTATCTAAGGTAATATAAAGAATGAAAGC
AATAGTCAATTAATCAAGTAATTAACCTTTTGATAGTAGCGATTACGAAA
TGAATTGTTCCCACTTATATCTCCTTC
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATGAGGCATACTATTAACTCTGGC
TTCAAAGAGTGAAGCATGGAGGACAGAGTTAAACAGCTGGGAAAGCCTTT
TTCTTTCCAACAAGAGAAGCCTGGCTTTATGCTTTGCCAACACGCAGGCA
TAATGTGATCATTTCCTGATGATTTCTGCCAAGCTATATGGAGGTACAAA
CGTACTGGTGTAAAGAGAAGGAAGTTATTCTGTATGCAGACCCGGGGCAA
AGTGGACCAGGACCTCTCTATTGAAGAACTCACCTCTCTGCATTAGGTAA
GTCCCCAGGCCGGGTCGAATCGTACATGGCCCCCAGCAGCAGCCAGCAAG
AATTTTTGATGAGGACAACTACGAGGGGCTGTGTCTGCTCCAGCTCTGCT
CCCACCTGCCTGTAATAATCCCACTGTCAGACCACACTTACCCTCTGGAG
GTAACAAATTCTATTAGCTGCAGACAGTAATATTTTCATACCTGCGCCTG
TAATCACCTCCCTCCCGCAAGTGGATTAGTAAAAATGCACACGCAAACGC
ATCAGCCTCGAGTCCGGTGTCCCTCTTCACATGCAAATGTAATCAATAGA
CACCAAGGTGATTTGCATAATGGAAAAAGGAGAAGGAGTCTTTTGCAACA
TGCCTTCTGATTGTGAAAACTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_i03.b1 MSMg01no181_i03.b1 CHROMAT_FILE:
MSMg01no181_i03.b1 PHD_FILE: MSMg01no181_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:59 2005
         (568 letters)



>mm_chr9_49203025_49203991
          Length = 967

 Score = 1025 bits (530), Expect = 0.0
 Identities = 554/564 (98%), Gaps = 5/564 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccccaaacta--tccctttttttattcctggttctagcgatcttataatgttagg 62
           |||||||||||||||  |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaattccccaaactatgt---tttttttattcctggttctagcgatcttataatgttagg 505

                                                                       
Query: 63  gcaagcttctgttcttctagcagatggtttaataaatgaaagttacatttttcaagtgta 122
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaagcttctgttcttctagcagatggtttaataaatgaaagttacatttttcaagtgta 445

                                                                       
Query: 123 ataacataagtttcaaaagagctaactcatccattctttcatttgctcaacacactcaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataacataagtttcaaaagagctaactcatccattctttcatttgctcaacacactcaca 385

                                                                       
Query: 183 tgcacagttagttaggagttccagagtcttgtggtagaaacagaaatgagcattcattaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcacagttagttaggagttccagagtcttgtggtagaaacagaaatgagcattcattaa 325

                                                                       
Query: 243 ttcttgatgctttaacatttattaatcactttacatgtggctaaaaaacacaggcaaaca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcttgatgctttaacatttattaatcactttacatgtggctaaaaaacacaggcaaaca 265

                                                                       
Query: 303 aaatatacatggttttgtatcttacattctagaagaaataatagctattgtgctcagcat 362
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatatccatggttttgtatcttacattctagaagaaataatagctattgtgctcagcat 205

                                                                       
Query: 363 cacacatctgtaactccagttgctccaaatgctgacgcacagggagagaaaattcaaggc 422
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cacacatctgtaattccagttgctccaaatgctgacgcacagggagagaaaattcaaggc 145

                                                                       
Query: 423 tagcctgagctacagagtgaactcaaagtcagcttgacaacttagtcaaacgctgtctca 482
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 144 tagcctgagctacagagtgaactcaaagtcagcttggcaacttagtcaaacgctgtctca 85

                                                                       
Query: 483 aaaccgaaaaaaaaataaaaactaaactaaaaagagaggttttggtatatttcagttgta 542
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  aaaccaaaaaaaaaataaaaactaaactaaaaagagaggttttggtatatttcagttgta 25

                                   
Query: 543 tagtatgcttgcctagtatacaga 566
           ||||||||||||||||||||||||
Sbjct: 24  tagtatgcttgcctagtatacaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space:   534006
Effective search space used:   534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no181_i03.g1 MSMg01no181_i03.g1 CHROMAT_FILE:
MSMg01no181_i03.g1 PHD_FILE: MSMg01no181_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:59 2005
         (530 letters)



>mm_chr9_49025625_49026554
          Length = 930

 Score =  994 bits (514), Expect = 0.0
 Identities = 526/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgaggcatactattaactctggcttcaaagagtgaagcatggaggacagagttaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgaggcatactattaactctggcttcaaagagtgaagcatggaggacagagttaaac 260

                                                                       
Query: 61  agctgggaaagcctttttctttccaacaagagaagcctggctttatgctttgccaacacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgggaaagcctttttctttccaacaagagaagcctggctttatgctttgccaacacg 320

                                                                       
Query: 121 caggcataatgtgatcatttcctgatgatttctgccaagctatatggaggtacaaacgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcataatgtgatcatttcctgatgatttctgccaagctatatggaggtacaaacgta 380

                                                                       
Query: 181 ctggtgtaaagagaaggaagttattctgtatgcagacccggggcaaagtggaccaggacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtgtaaagagaaggaagttattctgtatgcagacccggggcaaagtggaccaggacc 440

                                                                       
Query: 241 tctctattgaagaactcacctctctgcattaggtaagtccccaggccgggtcgaatcgta 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tctctattgaagaactcacctctctgcattaggtaagtccccaggctgggtcgaatcgta 500

                                                                       
Query: 301 catggcccccagcagcagccagcaagaatttttgatgaggacaactacgaggggctgtgt 360
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 501 catggcccccagcagcagccagcaagaatttttgatgaggacaattacgaggggctatgt 560

                                                                       
Query: 361 ctgctccagctctgctcccacctgcctgtaataatcccactgtcagaccacacttaccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctccagctctgctcccacctgcctgtaataatcccactgtcagaccacacttaccct 620

                                                                       
Query: 421 ctggaggtaacaaattctattagctgcagacagtaatattttcatacctgcgcctgtaat 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccggaggtaacaaattctattagctgcagacagtaatattttcatacctgcgcctgtaat 680

                                                             
Query: 481 cacctccctcccgcaagtggattagtaaaaatgcacacgcaaacgcatca 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacctccctcccgcaagtggattagtaaaaatgcacacgcaaacgcatca 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)