Query= MSMg01no181_i03.b1 MSMg01no181_i03.b1 CHROMAT_FILE:
MSMg01no181_i03.b1 PHD_FILE: MSMg01no181_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:59 2005
(568 letters)
>mm_chr9_49203025_49203991
Length = 967
Score = 1025 bits (530), Expect = 0.0
Identities = 554/564 (98%), Gaps = 5/564 (0%)
Strand = Plus / Minus
Query: 5 gaattccccaaacta--tccctttttttattcctggttctagcgatcttataatgttagg 62
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaattccccaaactatgt---tttttttattcctggttctagcgatcttataatgttagg 505
Query: 63 gcaagcttctgttcttctagcagatggtttaataaatgaaagttacatttttcaagtgta 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaagcttctgttcttctagcagatggtttaataaatgaaagttacatttttcaagtgta 445
Query: 123 ataacataagtttcaaaagagctaactcatccattctttcatttgctcaacacactcaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataacataagtttcaaaagagctaactcatccattctttcatttgctcaacacactcaca 385
Query: 183 tgcacagttagttaggagttccagagtcttgtggtagaaacagaaatgagcattcattaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcacagttagttaggagttccagagtcttgtggtagaaacagaaatgagcattcattaa 325
Query: 243 ttcttgatgctttaacatttattaatcactttacatgtggctaaaaaacacaggcaaaca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcttgatgctttaacatttattaatcactttacatgtggctaaaaaacacaggcaaaca 265
Query: 303 aaatatacatggttttgtatcttacattctagaagaaataatagctattgtgctcagcat 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatatccatggttttgtatcttacattctagaagaaataatagctattgtgctcagcat 205
Query: 363 cacacatctgtaactccagttgctccaaatgctgacgcacagggagagaaaattcaaggc 422
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cacacatctgtaattccagttgctccaaatgctgacgcacagggagagaaaattcaaggc 145
Query: 423 tagcctgagctacagagtgaactcaaagtcagcttgacaacttagtcaaacgctgtctca 482
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 144 tagcctgagctacagagtgaactcaaagtcagcttggcaacttagtcaaacgctgtctca 85
Query: 483 aaaccgaaaaaaaaataaaaactaaactaaaaagagaggttttggtatatttcagttgta 542
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aaaccaaaaaaaaaataaaaactaaactaaaaagagaggttttggtatatttcagttgta 25
Query: 543 tagtatgcttgcctagtatacaga 566
||||||||||||||||||||||||
Sbjct: 24 tagtatgcttgcctagtatacaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space: 534006
Effective search space used: 534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_i03.g1 MSMg01no181_i03.g1 CHROMAT_FILE:
MSMg01no181_i03.g1 PHD_FILE: MSMg01no181_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:59 2005
(530 letters)
>mm_chr9_49025625_49026554
Length = 930
Score = 994 bits (514), Expect = 0.0
Identities = 526/530 (99%)
Strand = Plus / Plus
Query: 1 aaatgaggcatactattaactctggcttcaaagagtgaagcatggaggacagagttaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgaggcatactattaactctggcttcaaagagtgaagcatggaggacagagttaaac 260
Query: 61 agctgggaaagcctttttctttccaacaagagaagcctggctttatgctttgccaacacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgggaaagcctttttctttccaacaagagaagcctggctttatgctttgccaacacg 320
Query: 121 caggcataatgtgatcatttcctgatgatttctgccaagctatatggaggtacaaacgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcataatgtgatcatttcctgatgatttctgccaagctatatggaggtacaaacgta 380
Query: 181 ctggtgtaaagagaaggaagttattctgtatgcagacccggggcaaagtggaccaggacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtgtaaagagaaggaagttattctgtatgcagacccggggcaaagtggaccaggacc 440
Query: 241 tctctattgaagaactcacctctctgcattaggtaagtccccaggccgggtcgaatcgta 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tctctattgaagaactcacctctctgcattaggtaagtccccaggctgggtcgaatcgta 500
Query: 301 catggcccccagcagcagccagcaagaatttttgatgaggacaactacgaggggctgtgt 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 501 catggcccccagcagcagccagcaagaatttttgatgaggacaattacgaggggctatgt 560
Query: 361 ctgctccagctctgctcccacctgcctgtaataatcccactgtcagaccacacttaccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctccagctctgctcccacctgcctgtaataatcccactgtcagaccacacttaccct 620
Query: 421 ctggaggtaacaaattctattagctgcagacagtaatattttcatacctgcgcctgtaat 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccggaggtaacaaattctattagctgcagacagtaatattttcatacctgcgcctgtaat 680
Query: 481 cacctccctcccgcaagtggattagtaaaaatgcacacgcaaacgcatca 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacctccctcccgcaagtggattagtaaaaatgcacacgcaaacgcatca 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|