BAC Information

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BAC

Clone NameMSMg01-181K16
Chromosome9 (Build37)
Map Location 47,531,426 - 47,658,946
singlet/doubletdoublet
Overlap geneCadm1
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181K16.T7 (MSMg01no181_k16.b1)MSMg01-181K16.TJ (MSMg01no181_k16.g1)
ACCAG374774AG374775
length733730
length of high quality
(start - end)		650 (40 - 689)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no181_k16.b1 PHD_FILE: MSMg01no181_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:11 2005CHROMAT_FILE: MSMg01no181_k16.g1 PHD_FILE: MSMg01no181_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,658,300 - 47,658,946)(47,531,426 - 47,531,714)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGCAGGTCTATCCCAAAAAATGGGAGGTTTGGGAGGGGGAAAAAAACAAA
TTTGATTTTGGGAAAAATAAATGGGCAAGAGGGAAGAAACACAACAAACG
AATGAAAAACAAGGCACAGAATTTTCTGCAATCTACCGAAACCAAATCCA
AGTACCCAAGTTTGACTTGGTAGGAAGAAATATAAATGAAAAAAACAAAA
AACCAAAAAAACCCAAAACCCAAAGCAAATTAAAACCAGATTAAAAAGAG
GTGTCAAACAGCAGAGTGTACTTTCAAAGAACATTCTTTGTTTTTGTTTG
TACATTGCAAATCCCAAGCCTTCCCAGTCTCGCATCTCTCCACCCACTCA
TAAAAAAACAAAACAAAACAAAAAACCACACGAGCTTCTCGAAAGTTCCA
GTATCACTGTCTCTTTATCATCTAAACAGGCCAGTTGGACACCTCATTGG
AACAAAAAGGCTGATCTAGATGAAGTACTCTTTCTTTTCTTCGGAGTTGT
TCTGTCCTCCTTCTGCATTGATTATAGCTGTGTCTGCGTCTGCTGCGTCA
TCGGCTCCTTTGGCTTCATGAGTGAAGTATGTACCTGAAAGATGAAGGGG
TAAAGCACTGTGACTCTCTGGTGGCCTCTGTGAGAAGTGGTACAGAGATG
GCAAGTTGCTTTATGGCCATCATCAGCCGAAGT

CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGGTTGTGTTGAATTGAAAAGGCCCACTGGG
TTGAGGCCAATCTGTATGTTTAAAATTATGCACTGCCAAGTCCTCCTCTG
GTGCTCCTTTTTTAAAAACTTCGTTTTTTAGAAGGTTGACAACTTTAAAA
GAAATGGTGTGTTCCTTTAACCCCTAGAACATTTTATTTAAATTTAGTCA
CTGGTTTGGAGAACGAATAAACAGAACCTTGACTTAAATGTTCCCGTGTC
TGAGAATGAATGGGAAGTGATATGATTTATAGCTAGTTGGAAGGAAAAAA
ATAAAGAATATAATAGAGACACCGACCCCCCAAATTATTGGTTTCTGCAG
TGCGTTTCTGATCTAACTCTCAATCGTGAGTACAGTTTATGCCTTGCTTA
AATGCTACTTGCCAGGCCACGGAAGCAAATCTCTGCCTTTTATATAACGT
CAGCTTAATTGGATGTTTGTCAGCTCTGTAGCAGTCTGAAGTGGAAAGAG
GAGATCATCTGTATTCATAGCCAGCAGGGTCTTGATAAATATTTCTTAAT
TGACTAAATAGAGGAATGAATGAATGAATTGTATTCAGAAATTTACAGGA
TAGCACAGTAGTATTTGTCATCTGTGTAATACAAATGGTGTGTATATGAG
TGATGAAGTTGCTGGTACCTTTATCAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_k16.b1 MSMg01no181_k16.b1 CHROMAT_FILE:
MSMg01no181_k16.b1 PHD_FILE: MSMg01no181_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:11 2005
         (650 letters)



>mm_chr9_47658097_47659146
          Length = 1050

 Score = 1236 bits (639), Expect = 0.0
 Identities = 645/647 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagcaggtctatcccaaaaaatgggaggtttgggagggggaaaaaaacaaatt 63
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ggaattccagcaggtcaattccaaaaaatgggaggtttgggagggggaaaaaaacaaatt 791

                                                                       
Query: 64  tgattttgggaaaaataaatgggcaagagggaagaaacacaacaaacgaatgaaaaacaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tgattttgggaaaaataaatgggcaagagggaagaaacacaacaaacgaatgaaaaacaa 731

                                                                       
Query: 124 ggcacagaattttctgcaatctaccgaaaccaaatccaagtacccaagtttgacttggta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ggcacagaattttctgcaatctaccgaaaccaaatccaagtacccaagtttgacttggta 671

                                                                       
Query: 184 ggaagaaatataaatgaaaaaaacaaaaaaccaaaaaaacccaaaacccaaagcaaatta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggaagaaatataaatgaaaaaaacaaaaaaccaaaaaaacccaaaacccaaagcaaatta 611

                                                                       
Query: 244 aaaccagattaaaaagaggtgtcaaacagcagagtgtactttcaaagaacattctttgtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaaccagattaaaaagaggtgtcaaacagcagagtgtactttcaaagaacattctttgtt 551

                                                                       
Query: 304 tttgtttgtacattgcaaatcccaagccttcccagtctcgcatctctccacccactcata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tttgtttgtacattgcaaatcccaagccttcccagtctcgcatctctccacccactcata 491

                                                                       
Query: 364 aaaaaacaaaacaaaacaaaaaaccacacgagcttctcgaaagttccagtatcactgtct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaaaaacaaaacaaaacaaaaaaccacacgagcttctcgaaagttccagtatcactgtct 431

                                                                       
Query: 424 ctttatcatctaaacaggccagttggacacctcattggaacaaaaaggctgatctagatg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctttatcatctaaacaggccagttggacacctcattggaacaaaaaggctgatctagatg 371

                                                                       
Query: 484 aagtactctttcttttcttcggagttgttctgtcctccttctgcattgattatagctgtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aagtactctttcttttcttcggagttgttctgtcctccttctgcattgattatagctgtg 311

                                                                       
Query: 544 tctgcgtctgctgcgtcatcggctcctttggcttcatgagtgaagtatgtacctgaaaga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tctgcgtctgctgcgtcatcggctcctttggcttcatgagtgaagtatgtacctgaaaga 251

                                                          
Query: 604 tgaaggggtaaagcactgtgactctctggtggcctctgtgagaagtg 650
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgaaggggtaaagcactgtgactctctggtggcctctgtgagaagtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no181_k16.g1 MSMg01no181_k16.g1 CHROMAT_FILE:
MSMg01no181_k16.g1 PHD_FILE: MSMg01no181_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:11 2005
         (289 letters)



>mm_chr9_47531226_47531914
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggttgtgttgaattgaaaaggcccactgggttgaggccaatctgtatgtttaaaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggttgtgttgaattgaaaaggcccactgggttgaggccaatctgtatgtttaaaatta 260

                                                                       
Query: 61  tgcactgccaagtcctcctctggtgctccttttttaaaaacttcgttttttagaaggttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcactgccaagtcctcctctggtgctccttttttaaaaacttcgttttttagaaggttg 320

                                                                       
Query: 121 acaactttaaaagaaatggtgtgttcctttaacccctagaacattttatttaaatttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaactttaaaagaaatggtgtgttcctttaacccctagaacattttatttaaatttagt 380

                                                                       
Query: 181 cactggtttggagaacgaataaacagaaccttgacttaaatgttcccgtgtctgagaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactggtttggagaacgaataaacagaaccttgacttaaatgttcccgtgtctgagaatg 440

                                                            
Query: 241 aatgggaagtgatatgatttatagctagttggaaggaaaaaaataaaga 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgggaagtgatatgatttatagctagttggaaggaaaaaaataaaga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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