BAC Information

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BAC

Clone NameMSMg01-181M03
Chromosome9 (Build37)
Map Location 98,491,757 - 98,636,879
singlet/doubletdoublet
Overlap geneMrps22
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2
Downstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181M03.T7 (MSMg01no181_m03.b1)MSMg01-181M03.TJ (MSMg01no181_m03.g1)
ACCAG374838AG374839
length704749
length of high quality
(start - end)		502 (46 - 547)226 (79 - 304)
definitionCHROMAT_FILE: MSMg01no181_m03.b1 PHD_FILE: MSMg01no181_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:18 2005CHROMAT_FILE: MSMg01no181_m03.g1 PHD_FILE: MSMg01no181_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,491,757 - 98,492,255)(98,636,658 - 98,636,879)
sequence
ATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTGCCTCCTGAACTGGGTCACACAGTACATGCTGATGAAGCAA
GCCTCCCAGGAATTATCACTAGGAAGGCTGTCCTGATGAAAAGCAATGAA
GCATCTTGGGTAATATGAGTGTAATCTTTGAGTGACATTCAGATTGCAAG
TGAGATACTTCTGCAGTCTGAGGATGGAATGACTACTGATGCCTCTTCTT
ATTCAATCTTAATAGTCCAGCAAGGGCTTTGGGAAAGTTAACTTCTCATA
GCAGCCATGATGGTTCCTTCCCCTGAGAGTTTGGATTTTTTCACCTAAAT
GTAAAAAGCTATTTTCTTTCCAGTTTTACCTCAAACTATATGCATAACTC
AGAAATACTGAGTTTTGTTCCTAACCAAAAGCAATAAACAAGTCATGAGC
CTTTAAGTTTACTAGTATAGTTATTCTATACTATACAGTAGTCTATTAAC
TACAATATATTTAAAGTCAATTTTACAAAATGGTCATTTTTAATAAAAAA
TATTCATCAACAAACTTCCTTAACTAAAGATACCAACTATCCGTTTACTT
TTGTTTTTAGATAGGCTCTGACTAAGTACATCAGTTTGGTCTCAAATTCC
AAAGATCCTTCCATTTTACCCCCCATGTACTACCTTACCCAGTCTTACTT
TATC

TACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCCAAAGCCTTTGCGTGC
AGAAATGCAGACCACACCCAAGAGTTACCTCCGAATGATGCCCATGCTTG
TCTGCTAGGGATCTTTTTAGACACAGATTCCTTTCTATAACAGCCAGGTA
GGATCCAGGTCGGCCGGGCATCACATTTACCAGGGTTTGGAGGGAGACGC
TCTTTTAGGGAAGGCATTACAAAGACTAGGAGGGTAGGAGGGGGATTATT
NTCNNNGNCNCNNNNNNNNTTTTTTTTTTTTTTCTTTTTTCTCCCTTGCT
GTTGTTCTATTTTTTTTATTCCCCTCCTTCCTCCTCTCTCTTTCCCTTCT
TTCTTTCGGTTATTTCTTTTTTCCCCCCCCGCTTTTCTTCTCTCTTTGCT
GTGCTCCGCTTTCCTTCTCTTCCTTTTATTTCTTACCCACCTCTATGGTT
TCTCCTCCGTACCCTTTCTCCTTGAGCTAACACCTTATCACTCCTTAATC
CATCTTTCATATCTTTCCGTATCTCTATCCTTTTTGATTTTTCTACATCT
TCATACTTATCCACTTTTTTTTCCTCTTTGGTTTCCAATAATTCGTCGTT
CACCCGGAACACGCCCACTAGGATAACCCGTAGTATTTCCTTTTTCATAA
TGTTTGTTATGTAAACCTCCTCCTCTATTTATTCAACATTTCTACCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_m03.b1 MSMg01no181_m03.b1 CHROMAT_FILE:
MSMg01no181_m03.b1 PHD_FILE: MSMg01no181_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:18 2005
         (502 letters)



>mm_chr9_98491554_98492455
          Length = 902

 Score =  934 bits (483), Expect = 0.0
 Identities = 495/499 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgctgcctcctgaactgggtcacacagtacatgctgatgaagcaagcctccca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgctgccttctgaactgggtcacacagtacatgctgatgaagcaagcctccca 263

                                                                       
Query: 64  ggaattatcactaggaaggctgtcctgatgaaaagcaatgaagcatcttgggtaatatga 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 264 ggaattatcactaggaaggctgtcctgatgaaaagcaatgaagcatcttgggtaatgtga 323

                                                                       
Query: 124 gtgtaatctttgagtgacattcagattgcaagtgagatacttctgcagtctgaggatgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgtaatctttgagtgacattcagattgcaagtgagatacttctgcagtctgaggatgga 383

                                                                       
Query: 184 atgactactgatgcctcttcttattcaatcttaatagtccagcaagggctttgggaaagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgactactgatgcctcttcttattcaatcttaatagtccagcaagggctttgggaaagt 443

                                                                       
Query: 244 taacttctcatagcagccatgatggttccttcccctgagagtttggattttttcacctaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 taacttctcatagcagccatgatggttccttcccctgagagtttggattttttcgcctaa 503

                                                                       
Query: 304 atgtaaaaagctattttctttccagttttacctcaaactatatgcataactcagaaatac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgtaaaaagctattttctttccagttttacctcaaactatatgcataactcagaaatac 563

                                                                       
Query: 364 tgagttttgttcctaaccaaaagcaataaacaagtcatgagcctttaagtttactagtat 423
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 tgagttttgttcctaaccaaaagcaataaacaaatcatgagcctttaagtttactagtat 623

                                                                       
Query: 424 agttattctatactatacagtagtctattaactacaatatatttaaagtcaattttacaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agttattctatactatacagtagtctattaactacaatatatttaaagtcaattttacaa 683

                              
Query: 484 aatggtcatttttaataaa 502
           |||||||||||||||||||
Sbjct: 684 aatggtcatttttaataaa 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no181_m03.g1 MSMg01no181_m03.g1 CHROMAT_FILE:
MSMg01no181_m03.g1 PHD_FILE: MSMg01no181_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:18 2005
         (226 letters)



>mm_chr9_98636458_98637083
          Length = 626

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcccaaagcctttgcgtgcagaaatgcagaccacacccaagagttacctccgaatga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 422 cattcccaaagcctttgcgtgcagaaatgcagaccacacccaagagttacctccaaatga 363

                                                                       
Query: 61  tgcccatgcttgtctgctagggatctttttagacacagattcctttctataacagccagg 120
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 362 tgcccatgcttgtcagctagggatctttttagacgcagattcctttctataacagccagg 303

                                                                       
Query: 121 taggatccaggtcggccgggcatcacatttaccagggtttggagggagacgctcttttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taggatccaggtcggccgggcatcacatttaccagggtttggagggagacgctcttttag 243

                                                     
Query: 181 ggaaggcattacaaagactaggagggtaggagggggattatt 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggaaggcattacaaagactaggagggtaggagggggattatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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