BAC Information

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BAC

Clone NameMSMg01-182F16
Chromosome9 (Build37)
Map Location 90,137,454 - 90,137,947
singlet/doubletsinglet
Overlap geneTbc1d2b
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7
Downstream geneLOC100039777, LOC100039925, EG434428, LOC621576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182F16.T7 (MSMg01no182_f16.b1)MSMg01-182F16.TJ (MSMg01no182_f16.g1)
ACCAG375259AG375260
length754702
length of high quality
(start - end)
248 (69 - 316)498 (46 - 543)
definitionCHROMAT_FILE: MSMg01no182_f16.b1 PHD_FILE: MSMg01no182_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:04 2005CHROMAT_FILE: MSMg01no182_f16.g1 PHD_FILE: MSMg01no182_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCAGTTCCTCAGATTATTGGACATAGTACTACCGGAGGATCCCGCAATA
CCGCTCTTGTTTATACCTCCACCCGATGCCCTAATTGGTAAGAAGGACAC
ATGTTCCACCCCCCTCATAAAAAACTTATTTATAATAGTCAGAAGCTGGA
AGGAACCTAGATGTCCCTCATCAGGGTAATGGATACAGACAATGTGTTAC
ATCTATACAATGCAGTACCACTCATTTATTACAAATAATGAATTTATGAC
ACCCCTAACCTAATGTATGTACTTGTAAGCCTTTACCTTGATTGCCCCCC
CTTTTTCACATTCTTACCTCTCTCATTTACGACCCCATTTGCATATTTCT
ATATTACTCCCTATTCCACGTAACTTCTACGACATAGGGATTTCATTTTT
TCCATTTTCTCCGCCCCTCTTTTATATATTGCCCCACTCGTTGCCATCGT
TTCC
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCAGGACGGCCAGGAACCAGTCACCACAGAACACAGAAAGTCC
TGGTAGCCAGACCCCTGCTCTATGTTCGTGGGTTCCAGAAACAGCCTGGG
AAACCACTGGATGGAGAGAAGGGTAAGCATAGTGGTTGCTCTCTTCACTA
AAATGTTGGGGTCCCCTTTGAGATTTCATTTGGAAGGGGGGATCTCATAA
GCAAAAGGAAACAAAAATACAGACACCACCAATTCAGCCCAATCTCTCGA
TGCTGTGTCAGAACACTGATACCCTGAGCCAGGGATAAGAGTCACCGGCC
TTGGCAGTAACTCACACGGCTAGGAAGCAGAGAAGACTGCTCAGAACCTG
ACAGCCAGAATACACCCATCACTCACCATCTGTGAGTACTCGGGCCAGCC
CACAGGCACACTGAGATCTACTCTCTACTTCAGAGAAAGGCCGCGCTGTT
CCACACACTTCCTGAAGGCTGGTCTCTTGCAGACCCAGCTTGAGCTAGAG
CATGGCAGTTCTAATCTTGGCCAGTATTTGAGCCCCAATTGTATCCATTG
TTTCACAGCCGGTGTAGTGTTCTTTCCTGTGAGGTTTGTCTACTCAGTTG
TTAGCCCCTTCCCTTACTAGAAAATGACCCTTCCTTATGTATCATATTTC
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_f16.g1 MSMg01no182_f16.g1 CHROMAT_FILE:
MSMg01no182_f16.g1 PHD_FILE: MSMg01no182_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:04 2005
         (498 letters)



>mm_chr9_90137250_90138147
          Length = 898

 Score =  901 bits (466), Expect = 0.0
 Identities = 487/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcaggacggccaggaaccagtcaccacagaacacagaaagtcctggtagcca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcaggaaggccaggaaccagtcaccacagaacacagaaagtcctggtagcca 264

                                                                       
Query: 65  gacccctgctctatgttcgtgggttccagaaacagcctgggaaaccactggatggagaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacccctgctctatgttcgtgggttccagaaacagcctgggaaaccactggatggagaga 324

                                                                       
Query: 125 agggtaagcatagtggttgctctcttcactaaaatgttggggtcccctttgagatttcat 184
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 agggtaaacatagtggttgctctcttcactgaaatgttggggtcccctttgagatttcat 384

                                                                       
Query: 185 ttggaaggggggatctcataagcaaaaggaaacaaaaatacagacaccaccaattcagcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggaaggggggatctcataagcaaaaggaaacaaaaatacagacaccaccaattcagcc 444

                                                                       
Query: 245 caatctctcgatgctgtgtcagaacactgataccctgagccagggataagagtcaccggc 304
           |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct: 445 caatctctcgatgctgtgtcagaacactgaaaccctgagccaggcataagagtcaccgcc 504

                                                                       
Query: 305 cttggcagtaactcacacggctaggaagcagagaagactgctcagaacctgacagccaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttggcagtaactcacacggctaggaagcagagaagactgctcagaacctgacagccaga 564

                                                                       
Query: 365 atacacccatcactcaccatctgtgagtactcgggccagcccacaggcacactgagatct 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atacagccatcactcaccatctgtgagtactcgggccagcccacaggcacactgagatct 624

                                                                       
Query: 425 actctctacttcagagaaaggccgcgctgttccacacacttcctgaaggctggtctcttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actctctacttcagagaaaggccgcgctgttccacacacttcctgaaggctggtctcttg 684

                         
Query: 485 cagacccagcttga 498
           ||||||||||||||
Sbjct: 685 cagacccagcttga 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)