BAC Information

Click to search

BAC

Clone NameMSMg01-182G10
Chromosome9 (Build37)
Map Location 6,951,779 - 6,952,003
singlet/doubletsinglet
Overlap geneDync2h1
Upstream geneLOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
Downstream geneLOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182G10.T7 (MSMg01no182_g10.b1)MSMg01-182G10.TJ (MSMg01no182_g10.g1)
ACCAG375294AG375295
length733784
length of high quality
(start - end)
269 (44 - 312)241 (70 - 310)
definitionCHROMAT_FILE: MSMg01no182_g10.b1 PHD_FILE: MSMg01no182_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:08 2005CHROMAT_FILE: MSMg01no182_g10.g1 PHD_FILE: MSMg01no182_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAAGAGGATCCGC
GGAATTCTATTTCCTCCATGTCCTGTGTTTAATTGGGTTGCTCATTGTCC
TATGTTTAGTTTTTTGAGTTCACTGTATATTCTAGACAATGACCCTCTGC
CTGGTATATTCTGCCTATTCCTTCAAATGATGGTGCCACTTGCTTTATGG
AACGTTCTTGTTTCTTGAGGTCTCACTTACTTTTGGTCTCAATGCCTACC
TAGTCTTTGTGACCTGTTCCGAAAAATCCCGTGCTTTCCTCTGTCAGATT
TAGGGATTCTGGTTTTATCTTGAGGTCCTTGATCCACTTGTATCAGAGTG
ATTCCATTCTTCTATGTGCATAGGCTAGGCCCCTAGGATACATGTGATGT
TTGGACACCCCTTCTTTTTTAAATATGTTGGGATTTTTAAAGACTCTTTT
TCATAAACTACTACTTTTTATCATGTCCTTATTTTTACACTTTATTCCAT
TTTACCTTACTCTTCTTTATATCTTTTCTCTTTAGACTATTCTTCTCTTC
CATCTTCGCCAATCTTTTTTTCCCAATAACACTCTTTTCCTTCTTTTTTC
TCATTCCTCACTCTCCATAATCCACATACTCCTCTATCAATGCCCTTTAT
TGTTTGTAATTTTTTTCTTTTTCTCTTCATTTCTTCTTCACTTTTCTACG
TTCTTTCCTATTCTTATTTCCCTTTTTCTCTTT
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTCATGTGGCTATCTTCTTTAGGTTTGCT
GAAAGATTACTTTCCTGCTCTTTCTTGAGCTTAGTTTTACTCATTGTATT
GAAATTTTCTCTTTATTATCCTTTGAAAGGCTTTATTTGTGGAAAGATAT
TGTGTAAATTTGGTTTTGTCATGGAATGTCTTAGTTTCTCCATCTATAGT
ACTTGAGAGTTTTGCTGGGTATAATAGCCTGGGTTGGCATTCTTGTTCTC
TTAGGGNCTGTATATTATGGTTCTAGGATCTTCTGGCTTTCAAAGACGAA
ATGTTAGATGGCCTCCGAGGCGGGCCCCCAAAGGNNGGGAAAAGANAGGG
NGAGGGGGGNCCCCCCCAAAAAAAAAAAAAAAACANCCCCGGGGGGGGGG
CGGGGCCGCCCCCCCCGCCCCCCCGNCCCCGGCGCCGCCCCGGCGGGGAG
ACGCCCCCCCCGCGCCGGCCGGGCCAACCCCGGGGNGGGGGGGCACCCCC
GGCGCTCAACCAAAAAAACGCCCCAGCAAAGGGGACAACAGCCAAACCCA
TTTCCCTCCCCCCCCTTTCCCCCCTCGTCTTTTGTCCCCCCGCCCTTTTC
CATTTTTTTCCCCACCATATTTTTACTATTGTGTTCGCCTTCTTTTTTTA
TTTCTCGTCCGAAGAACGTCATAATCATACTTTTCACACTTTAAACCCTT
TTCGCTCGGATACGCCAGCCCCATTTACATGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_g10.b1 MSMg01no182_g10.b1 CHROMAT_FILE:
MSMg01no182_g10.b1 PHD_FILE: MSMg01no182_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:08 2005
         (269 letters)



>mm_chr9_6951463_6952127
          Length = 665

 Score =  362 bits (187), Expect = e-104
 Identities = 217/231 (93%), Gaps = 9/231 (3%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattctatt---tcctccatgtcctgtgtttaattgggttgctcattgtcctatgttta 65
           ||||||||||   |  |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 gaattctatttaat--tccatgtcctatgtttaattgggttgctcattgtcctatgttta 484

                                                                       
Query: 66  gttttttgagttcactgtatattctagacaatgaccctctgcctggtatattctgcctat 125
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 483 gttttttgagttcactgtatattatagacaatgaccctctgcctggtatattctgcctat 424

                                                                       
Query: 126 tccttcaaatgatggtgccacttgctttatggaacgttcttgtttcttgaggtctcactt 185
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 423 tccttcaaatgatggtgccacttgctttatggaacgtttttgtttcttgaggtctcactt 364

                                                              
Query: 186 acttttggtctcaatgcctacctagtctttgtgacctgttccgaaaaatcc 236
           | ||||||||||||||||||    ||||||||||||||||| |||||||||
Sbjct: 363 atttttggtctcaatgccta----gtctttgtgacctgttcagaaaaatcc 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 665
Length adjustment: 9
Effective length of query: 260
Effective length of database: 656
Effective search space:   170560
Effective search space used:   170560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)