BAC Information

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BAC

Clone NameMSMg01-182H22
Chromosome9 (Build37)
Map Location 68,406,007 - 68,406,221
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182H22.T7 (MSMg01no182_h22.b1)MSMg01-182H22.TJ (MSMg01no182_h22.g1)
ACCAG375359AG375360
length763726
length of high quality
(start - end)
224 (119 - 342)315 (41 - 355)
definitionCHROMAT_FILE: MSMg01no182_h22.b1 PHD_FILE: MSMg01no182_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:15 2005CHROMAT_FILE: MSMg01no182_h22.g1 PHD_FILE: MSMg01no182_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGCAGTTTTACAAAGTAACACTGGTGCCACTACAAA
TGGGACTAGTTACTACCGGGTCAGTGTGGGAAAGGGTGAGTATGATCATT
TACAAAGCCTTCCTTAACAAAGGACTTCTCCGAGCCTTTAAAATGTTTCT
TGCATGGGTCAATATTGTCCAAACATCTTGCCCATGGAATACATGTCACT
TTGTTATGTATTGTACTTTGGAATGGAATATCCTAAGTTTTTGTTCAGTG
GTTTTGTTTGGTTTGATTATTTCCCCATTCCTGCTGCCTGCATTCCAAGA
TGTCTTTTTTTTTCCCCCCCCCCCCCACCTATAATATGTTAACTCATATT
CCTATTTCCCCCCCTATAAAAAAAAAAAAAATATTTCCCCTTGTTTTGTT
CTCCTTCCTTTTCCTCTTTCCCCTCTTTCCTCCTTTTTCCCTTTCCTCCT
TTTCTTCTTTCCCTCCTTTTCCCTTCCCTTCCTTCTCCTCTTTTTCTCTT
CCCCTTTCCCCCCTTTCCTTTCTTTTTTTTTTTCCTTTCCCCCTTCCCTT
TCTTTTCCCCCCCCTTTCTCTCTTCTTTCCTTCCCCCTTTTCTCCCCTTT
CCTTTTCTTCTTNCTTTCTCCCCCTTTTCCTCTTCTCTTTCCTCCCCCTG
CTTTTTTTTTTTCCCTTTCTCCCCCGCCTCTTTTTATTCTACCCCTCTCT
TCCCCTCCCTTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGTCTTCAGAACTCACATACAAAAGCCGGGTGTGGTGGGACACACCCCG
AGTCCTATGGCTAGGGAGGCAGAAAAGAGGACTACTGTGTCTCACTGGCC
AGCCAGCCTAGCTGAGAAAGGTGATCTTCAGAGTACATGAGAGATCCTAG
CTCAAGAAATAAGGTGAAGAGAAATTGAGAAATACACTCACCACTGACCT
CTTGTCTTCATGCATGTCTGCATAGTTGAGTGTGCTGTCTATATGGGAAC
ACACTTATTGCACACACTCACCCACACATATGCACACACAAAACAGAATT
CAAAAATTTTGTCAGCACACCACCTTACTTAACCTACAGCTAGTTTGGTT
AACTTGTCACCCCCCAATTCAGTTCACCTGAGAAAAACCTGGGCTAGGCA
TAGTGGCACACTCTTTTACTCCCAGCACTCTGGAGGCAGGCCAGTCTCTG
AGTTCAGTCTCTTTCAACCTGGTCTATAGAGTGAGTTCCAGGATAGCCAG
AGCTGTCAAGAAAAAAAAAGGAAGGAAAAAGGACAGAGGAAGGTAAGGAG
GGAGGCAGGCCACTTCTTTTCCCCCCCTCTTCTTTTCTCTCTCCCATACT
ATTTTCCCTATTCCTTTTATCCAACTCAGCCCCCCCCCCACACTATCCCG
TTTTTTTTGATTTTTCTTTCTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_h22.b1 MSMg01no182_h22.b1 CHROMAT_FILE:
MSMg01no182_h22.b1 PHD_FILE: MSMg01no182_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:15 2005
         (224 letters)



>mm_chr9_68405807_68406430
          Length = 624

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcagtgtgggaaagggtgagtatgatcatttacaaagccttccttaacaaaggacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggtcagtgtgggaaagggtgagtatgatcatttacaaagccttccttaacaaaggacttc 356

                                                                       
Query: 61  tccgagcctttaaaatgtttcttgcatgggtcaatattgtccaaacatcttgcccatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tccgagcctttaaaatgtttcttgcatgggtcaatattgtccaaacatcttgcccatgga 296

                                                                       
Query: 121 atacatgtcactttgttatgtattgtactttggaatggaatatcctaagtttttgttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atacatgtcactttgttatgtattgtactttggaatggaatatcctaagtttttgttcag 236

                                              
Query: 181 tggttttgtttggtttgattatttccccattcctg 215
           |||||||||||||||||| ||||||||||||||||
Sbjct: 235 tggttttgtttggtttgagtatttccccattcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)