Query= MSMg01no183_h04.b1 MSMg01no183_h04.b1 CHROMAT_FILE:
MSMg01no183_h04.b1 PHD_FILE: MSMg01no183_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:28 2005
(545 letters)
>mm_chr9_83481001_83481946
Length = 946
Score = 986 bits (510), Expect = 0.0
Identities = 534/542 (98%), Gaps = 1/542 (0%)
Strand = Plus / Plus
Query: 5 gaattctagatttttaaaaatttttttattaggtattttctttatttatatttccagtgc 64
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctagatttttaaaaaattttttattaggtattttctttatttacatttccagtgc 264
Query: 65 tatcccaaaagtccccccataccctcccaccccactcccctacccacccactcccacttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatcccaaaagtccccccataccctcccaccccactcccctacccacccactcccacttc 324
Query: 125 ttggccctggcgttcccctatattgaggcatataaagttggtaagaccagtggacctctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggccctggcgttcccctatattgaggcatataaagttggtaagaccagtggacctctc 384
Query: 185 tttccaatgatggctgactaagccatcttctgctacatatgcagctagagacatgagctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 385 tttccaatgatggctgactaagccatcttctgctacatatgcagctagagacacgagctt 444
Query: 245 cgggaggtactggttagttcatattgttgttccacctatagggttgcagatccctttagc 304
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggaggtactagttagttcatattgttgttccacctatagggttgcagatccctttagc 504
Query: 305 tcctttaaaactatattttatcaggacaggcaacttcattttctgtatttcctgctctgt 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 tcctttaaaactatattttatcaggacaggcaagttcattttctgtatttcctgctctgt 564
Query: 365 tagaagaacccacgtgtgctgcagtagattccggttgctctacctctctcgcagactttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagaagaacccacgtgtgctgcagtagattccggttgctctacctctctcgcagactttc 624
Query: 425 aggtt-gtgtctttgttggttttctttctcgcttgacctctgaggtgttctcatccgctg 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggtttgtgtctttgttggttttctttctcgcttgacctctgaggtgttctcatccgctg 684
Query: 484 ggctaggtcccttagcttggcttagttctgtctctggaagcttttcccttgaggttttct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 ggctaggtcccttagcttggcttagttctgtctctggaagcttttcccttgagtttttct 744
Query: 544 gc 545
||
Sbjct: 745 gc 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space: 500760
Effective search space used: 500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_h04.g1 MSMg01no183_h04.g1 CHROMAT_FILE:
MSMg01no183_h04.g1 PHD_FILE: MSMg01no183_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:28 2005
(287 letters)
>mm_chr9_83643616_83644302
Length = 687
Score = 551 bits (285), Expect = e-161
Identities = 285/285 (100%)
Strand = Plus / Minus
Query: 1 atagcatttgtgaaagaagaaaaataataggtgtgcagggagagaggcgagtgataacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atagcatttgtgaaagaagaaaaataataggtgtgcagggagagaggcgagtgataacag 426
Query: 61 attgtgatggtaaggctctgggtgggtaatttgtactgggactcgtaaaactggcgtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 attgtgatggtaaggctctgggtgggtaatttgtactgggactcgtaaaactggcgtttc 366
Query: 121 cgggctcccatggttaggtgtggccacacagatggctcttaaggagtcagagagagcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cgggctcccatggttaggtgtggccacacagatggctcttaaggagtcagagagagcaga 306
Query: 181 gctgttcattccagttggttttgcctgcggtatatagactagcttaacaaggggtaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gctgttcattccagttggttttgcctgcggtatatagactagcttaacaaggggtaagta 246
Query: 241 ggaaaactatgatgtaagaattagtcactaatatttacaaataat 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggaaaactatgatgtaagaattagtcactaatatttacaaataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
