MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-183H10
Chromosome	9 (Build37)
Map Location	66,729,177 - 66,729,279
singlet/doublet	singlet
Overlap gene	Rab8b
Upstream gene	Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c
Downstream gene	Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
Link	Open Mouse BAC browser

Click to get alignment info.

name	Trip4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56404 MGI:1928469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810417H13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68026 MGI:1915276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Csnk1g1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214897 MGI:2660884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppib (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19035 MGI:97750
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snx22 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382083 MGI:2685966
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Snx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56440 MGI:1928395
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5730536A07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68250 MGI:1915500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dapk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13143 MGI:1341297
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Herc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235439 MGI:2384589
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 224 ESTs, 6 Proteins

name	Fbxl22 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74165 MGI:1921415
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235441 MGI:2152450
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Car12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76459 MGI:1923709
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aph1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208117 MGI:3522097
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC623488 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623488
definition	note : protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene pseudo : _no_value

name	Aph1c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68318 MGI:1915568
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab8b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235442 MGI:2442982
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps27l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67941 MGI:1915191
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lactb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80907 MGI:1933395
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22003 MGI:98809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tln2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70549 MGI:1917799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041390 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041390
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100040253 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG640799 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:640799 MGI:3646550
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins

name	LOC665794 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 33 ESTs, 10 Proteins pseudo : _no_value

name	3300001A09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75697 MGI:1922947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG244911 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244911 MGI:3645763
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 3 Proteins

name	Vps13c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320528 MGI:2444207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trip4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71773828 GeneID:56404 MGI:1928469
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyroid hormone receptor interactor 4 transcript_id : NM_019797.3

name	2810417H13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71773931 GeneID:68026 MGI:1915276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810417H13 gene transcript_id : NM_026515.2

name	Csnk1g1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71773562 GeneID:214897 MGI:2660884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : casein kinase 1, gamma 1 transcript_id : NM_173185.2

name	Ppib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71774132 GeneID:19035 MGI:97750
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peptidylprolyl isomerase B transcript_id : NM_011149.2

name	Snx22 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131181 GeneID:382083 MGI:2685966
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 22 transcript_id : NM_001025612.2

name	Snx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71043943 GeneID:56440 MGI:1928395
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sorting nexin 1 transcript_id : NM_019727.2

name	5730536A07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71773979 GeneID:68250 MGI:1915500
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730536A07 gene transcript_id : NM_026635.3

name	Dapk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328166 GeneID:13143 MGI:1341297
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : death-associated kinase 2 transcript_id : NM_010019.2

name	Herc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260053 GeneID:235439 MGI:2384589
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 224 ESTs, 6 Proteins product : hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 transcript_id : XM_001477062.1

name	Fbxl22 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349543 GeneID:74165 MGI:1921415
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box and leucine-rich repeat protein 22 transcript_id : NM_175206.3

name	Usp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361676 GeneID:235441 MGI:2152450
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 3 transcript_id : NM_144937.3

name	Car12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560837 GeneID:76459 MGI:1923709
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbonic anyhydrase 12 transcript_id : NM_178396.3

name	Aph1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372127 GeneID:208117 MGI:3522097
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : anterior pharynx defective 1b homolog (C. elegans) transcript_id : NM_177583.3

name	Aph1c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129861 GeneID:68318 MGI:1915568
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : anterior pharynx defective 1c homolog (C. elegans) transcript_id : NM_026674.3

name	Rab8b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254271 GeneID:235442 MGI:2442982
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB8B, member RAS oncogene family transcript_id : NM_173413.2

name	Rps27l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803225 GeneID:67941 MGI:1915191
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S27-like transcript_id : NM_026467.2

name	Lactb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13507665 GeneID:80907 MGI:1933395
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lactamase, beta transcript_id : NM_030717.1

name	Tpm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361543 GeneID:22003 MGI:98809
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tropomyosin 1, alpha transcript_id : NM_024427.3

name	Tln2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486956 GeneID:70549 MGI:1917799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : talin 2 transcript_id : NM_001081242.1

name	LOC100041390 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260055 GeneID:100041390
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041390 transcript_id : XM_001477528.1

name	LOC100040253 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260006 GeneID:100040253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040253 transcript_id : XM_001474360.1

name	EG640799 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386181 GeneID:640799 MGI:3646550
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins product : predicted gene, EG640799 transcript_id : XM_979364.1

name	3300001A09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486784 GeneID:75697 MGI:1922947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 3300001A09 gene transcript_id : NM_001081314.1

name	EG244911 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386190 GeneID:244911 MGI:3645763
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 3 Proteins product : predicted gene, EG244911 transcript_id : XM_146937.5

name	Vps13c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:122114536 GeneID:320528 MGI:2444207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vacuolar protein sorting 13C (yeast) transcript_id : NM_177184.3

name	Trip4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71773829 CCDS:CCDS23298.1 GeneID:56404 MGI:1928469
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : transcription coactivator ASC-1 product : thyroid hormone receptor interactor 4 protein_id : NP_062771.2

name	2810417H13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71773932 CCDS:CCDS23299.1 GeneID:68026 MGI:1915276
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : hypothetical protein LOC68026 protein_id : NP_080791.2

name	Csnk1g1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71773563 CCDS:CCDS23300.1 GeneID:214897 MGI:2660884
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 note : casein kinase I, gamma 1 product : casein kinase 1, gamma 1 protein_id : NP_775277.2

name	Ppib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71774133 CCDS:CCDS23301.1 GeneID:19035 MGI:97750
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0042277 - peptide binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 note : cyclophilin B product : peptidylprolyl isomerase B protein_id : NP_035279.2

name	Snx22 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71774067 GeneID:382083 MGI:2685966
definition	codon_start : 1 product : sorting nexin 22 protein_id : NP_001020783.1

name	Snx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71043944 GeneID:56440 MGI:1928395
definition	GO_component : GO:0005768 - endosome [Evidence IDA] GO_function : GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] [Evidence IPI]; GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : sorting nexin 1 protein_id : NP_062701.2

name	5730536A07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386128 CCDS:CCDS23302.1 GeneID:68250 MGI:1915500
definition	codon_start : 1 product : family with sequence similarity 96, member A protein_id : NP_080911.1

name	Dapk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328167 CCDS:CCDS23303.1 GeneID:13143 MGI:1341297
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence ISS]; GO:0004685 - calcium- and calmodulin-dependent protein kinase activity [Evidence ISS]; GO:0005516 - calmodulin binding [Evidence ISS] [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS]; GO:0007243 - protein kinase cascade [Evidence ISS] codon_start : 1 product : death-associated kinase 2 protein_id : NP_034149.2

name	Herc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260054 GeneID:235439 MGI:2384589
definition	codon_start : 1 product : hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 protein_id : XP_001477112.1

name	Fbxl22 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29171324 CCDS:CCDS23304.1 GeneID:74165 MGI:1921415
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : F-box and leucine-rich repeat protein 22 protein_id : NP_780415.1

name	Usp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450103 CCDS:CCDS23305.1 GeneID:235441 MGI:2152450
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 3 protein_id : NP_659186.1

name	Car12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31541884 CCDS:CCDS23306.1 GeneID:76459 MGI:1923709
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004089 - carbonate dehydratase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006730 - one-carbon compound metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : CA XII product : carbonic anyhydrase 12 protein_id : NP_848483.2

name	Aph1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243936 CCDS:CCDS23307.1 GeneID:208117 MGI:3522097
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004175 - endopeptidase activity [Evidence IGI]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0043085 - positive regulation of enzyme activity [Evidence IEA]; GO:0016485 - protein processing [Evidence IEA] codon_start : 1 note : APH1B homolog; anterior pharynx defective 1c homolog product : anterior pharynx defective 1b homolog protein_id : NP_808251.1

name	Aph1c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21492616 CCDS:CCDS23308.1 GeneID:68318 MGI:1915568
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004175 - endopeptidase activity [Evidence IGI]; GO:0008233 - peptidase activity [Evidence ISS]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0001656 - metanephros development [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0043085 - positive regulation of enzyme activity [Evidence IEA]; GO:0016485 - protein processing [Evidence ISS] [Evidence IGI] codon_start : 1 note : anterior pharynx defective 1b product : anterior pharynx defective 1c homolog protein_id : NP_080950.1

name	Rab8b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734154 CCDS:CCDS23309.1 GeneID:235442 MGI:2442982
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : RAB44, member RAS oncogene family product : RAB8B, member RAS oncogene family protein_id : NP_775589.1

name	Rps27l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385958 GeneID:67941 MGI:1915191
definition	GO_component : GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ribosomal protein S27-like protein_id : NP_080743.1

name	Lactb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507666 GeneID:80907 MGI:1933395
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008800 - beta-lactamase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0030655 - beta-lactam antibiotic catabolism [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA] codon_start : 1 note : serine beta lactamase-like protein; mitochondrial ribosomal protein L56 product : lactamase, beta protein_id : NP_109642.1

name	Tpm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560030 CCDS:CCDS23311.1 GeneID:22003 MGI:98809
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005862 - muscle thin filament tropomyosin [Evidence TAS] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005200 - structural constituent of cytoskeleton [Evidence TAS] GO_process : GO:0006936 - muscle contraction [Evidence IEA] codon_start : 1 note : alpha tropomyosin product : tropomyosin 1, alpha protein_id : NP_077745.2

name	Tln2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486957 GeneID:70549 MGI:1917799
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence ISS]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0045202 - synapse [Evidence ISS] GO_function : GO:0003779 - actin binding [Evidence IEA] [Evidence ISS]; GO:0000062 - acyl-CoA binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0005198 - structural molecule activity [Evidence ISS] [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence ISS] codon_start : 1 product : talin 2 protein_id : NP_001074711.1

name	LOC100041390 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260056 GeneID:100041390
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477578.1

name	LOC100040253 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260007 GeneID:100040253
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474410.1

name	EG640799 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386182 GeneID:640799 MGI:3646550
definition	codon_start : 1 product : similar to Ankrd26 protein protein_id : XP_984458.1

name	3300001A09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486785 GeneID:75697 MGI:1922947
definition	codon_start : 1 product : hypothetical protein LOC75697 protein_id : NP_001074783.1

name	EG244911 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930340 GeneID:244911 MGI:3645763
definition	codon_start : 1 product : hypothetical protein protein_id : XP_146937.4

name	Vps13c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:122114537 GeneID:320528 MGI:2444207
definition	GO_process : GO:0008104 - protein localization [Evidence IEA] codon_start : 1 note : vps13c 5' variant II; vps13c 5' variant III; Vps13c 5' variant VI product : vacuolar protein sorting 13C protein_id : NP_796158.2

name	LOC665794 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260008 GeneID:665794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 33 ESTs, 10 Proteins product : similar to spindlin pseudo : _no_value transcript_id : XR_031755.1

clone name	MSMg01-506J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165E17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-134H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231P16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-435J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488J20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-507M03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-069P17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-183L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518P02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-363M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226B13
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-183H10.T7 (MSMg01no183_h10.b1)	MSMg01-183H10.TJ (MSMg01no183_h10.g1)
ACC	AG376045	AG376046
length	896	817
length of high quality (start - end)	108 (104 - 211)	---
definition	CHROMAT_FILE: MSMg01no183_h10.b1 PHD_FILE: MSMg01no183_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:29 2005	CHROMAT_FILE: MSMg01no183_h10.g1 PHD_FILE: MSMg01no183_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:29 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CCCTTTCTCGCCTCCTCTTCCTCCTTAGAACCACAACCGTCTAACACCCC ACCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXCGCGGAATTCATTTGCCTTTTAAAAGCTGCTTGCCTGCGGATCATAT TTAACTTCCACATAAAGGACAAAAGTTACTTTGGGGGTGTTTTTGGTTTT ATTTTGTTTTGCCTTTTTATCTTTTCTTTTCTCTGTTTTTTTTTCTATTT TTATTTCTTTGTCCTCCTCCCCTCTTTTGATTTATTTTTTCTTTCCTTTT CCCATCTCCTTCTATTTGCCCTTTTTTATTTTTTCTTTCCTTCCTTTTTA TCTCCCTTTTATTTTTTTTTTCCCCCCCCAACATTTCAATCTTTCTCCTC CTTCTCTCCTTCTTCCCCCTACTTCCTTTAATCCACTTGCAATATTGCAT GATAATTCATTTTTTTTTTCCCCCCCCCCCCCCGTTTTTTCTTCCCTTTC CCCCTATTTATTTGAAATATATAAACTTGCTCCGCGATTTCTTATCTTTT TTTCTTCATCTCCTCCCCCTTCTCTCCCCTTTCTCTTTTTGCTCTGACAC TTCCCCTTCCCTCCACCTGTACTTATCTTCCCGCTTTTTTATATAATATT TAACCTAGTTATAACCCATTCCCCTCCTCTAACTTCTATTACTTTTTTCT CTTGCAACCTTTCTTTTTCTGTCACTTCTCCTTATTCTTATTCTTTTGTC CTCCCCATAAATATTTACAGGGCTTAACGACTTCCACTATCCTCCCCTTC CCCCACCTCTTCCCCCCCCTTTTTATTTTTTCTTTTCTCCCCCCCCCTAT TTTCCGTGTCATCACTCTTTTCATTGTCTCGCCTCCTCAATTACCG	CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGTGTTCCAGCTTTGGAAGA CAGCCTAGGCAGGGTTTTTCTCCCTTTCTTTTGGTTTGCTTTTCCTTCCC CCCCCCNTCTCCCCCCCTCCCCCTTCCACTTCCCCTCCCTCCCCCCCCCT TCCCCCCTCCCCCTCCCCCTCTCCCCCCCCCCCCCTCCCTCCCCCCCCCC ACCCCCCCCCCCCTTCCCCCCCCCCCATCCTCCCCCCCCTCTACCAAAAT ACCCCCCACCCAATCCCCTCCCCCCCACCTTTTCCTCAACCACCCCCACC CCCACAAACACACCCAAACATATTTTTTTTTCCCCCCCCCCCCCCCCCCA AAAAAAACAAAAACAAAAAAATAAAAAAATAAAAACCCCCCCCCCCAAAA AAAAAAAAAAACCCCCCCTCCCCCCCCAAACCCCCCCAAAACACACCCCA ACCCCCCCCCCCTCCAACCCCCAACCCAACAACCCCCCCTACACACCCCC CCACCCAAACCCATCCACCAATACCCACAACAAACAAAAAAAAACAACAC CAAAAACACCCACCCACCCCCCCAACACCCAAACACCCCCACACCACAAA AACCACCCTCCCCCCCACCCCCCACCACCCACCCAAAAAAACCCACCACC CAAACAACCCCCCAAAAAAAACCACCCACCACTAAACAAAAAAACCACAA CCAAAAAACCCACCCCCCCCCCAAACACCACATACACCTAACCCCCCCCC CACCACCCCCACCCCAN
quality values	Open. Hide. 8 10 8 8 8 12 8 10 10 8 8 8 10 10 16 15 14 10 10 12 9 8 8 8 8 8 8 8 6 6 6 10 10 8 10 8 8 8 8 13 8 7 8 8 8 8 8 8 9 12 12 11 20 20 9 9 9 15 15 19 13 19 19 14 14 11 22 26 37 37 28 22 19 24 27 19 17 17 23 19 20 30 33 30 21 23 10 9 8 8 7 7 8 8 8 8 10 10 19 22 17 17 17 23 25 35 36 35 35 28 28 31 28 33 21 21 19 11 11 11 12 12 20 23 22 36 41 44 44 47 47 59 59 59 59 59 59 48 57 46 43 34 42 43 43 43 47 57 57 59 59 59 59 59 68 68 68 68 68 68 68 54 57 57 59 57 50 50 48 48 47 48 48 39 43 37 43 43 43 57 43 57 46 43 43 47 46 48 48 59 59 59 57 43 43 43 43 43 47 47 47 59 47 37 37 30 30 28 15 10 6 6 8 12 14 10 13 9 9 8 8 8 8 16 11 13 11 13 12 9 8 8 8 6 6 8 8 8 8 10 15 10 10 8 6 6 8 6 6 10 10 10 12 14 15 10 8 8 8 6 6 8 8 8 9 8 8 8 8 8 10 11 11 11 12 9 8 8 8 8 8 8 9 13 13 10 10 10 10 9 9 9 9 9 9 9 10 10 10 10 10 11 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 9 8 8 8 8 8 8 11 11 11 13 15 23 23 18 12 8 8 8 12 8 9 9 8 10 8 9 8 8 8 8 8 8 8 8 8 8 8 12 15 13 13 8 7 6 8 8 8 19 13 10 10 10 10 10 10 10 18 12 12 12 13 8 8 8 8 8 8 8 8 8 8 8 10 10 10 9 9 9 8 8 8 8 8 8 8 8 9 9 9 9 10 11 13 9 11 11 11 18 14 12 11 10 9 8 8 10 8 8 8 10 9 9 9 9 12 9 9 8 8 8 8 6 6 8 8 9 9 9 8 8 8 6 6 6 6 6 6 8 8 8 6 6 8 8 13 16 18 12 15 12 10 10 10 10 13 16 30 39 34 31 21 18 10 10 6 6 6 8 13 10 11 11 10 12 11 11 11 12 15 11 10 10 10 10 10 8 8 8 8 8 8 12 10 10 10 10 10 11 9 8 7 9 10 10 10 12 12 13 9 9 10 10 10 10 10 10 10 9 9 10 12 13 12 8 8 6 6 8 8 10 13 16 14 16 13 12 8 8 8 8 8 8 8 9 10 11 10 11 11 13 12 9 9 10 12 6 6 8 8 9 10 13 9 9 13 17 16 11 10 10 8 8 8 10 8 8 8 8 8 8 6 6 10 8 10 10 10 12 21 22 17 10 10 12 12 8 8 8 8 8 10 8 8 8 10 10 8 8 8 8 8 8 8 8 8 9 12 16 16 15 13 9 8 8 6 6 8 8 12 10 10 10 10 10 10 9 9 9 9 8 8 6 6 8 8 6 6 8 8 8 8 11 10 19 18 19 8 8 6 6 8 8 9 9 11 11 11 11 11 11 11 9 9 9 9 10 11 19 15 12 12 12 13 11 10 8 8 8 8 8 10 10 10 10 11 9 10 8 8 10 10 6 8 8 8 8 8 13 13 9 9 9 9 12 9 8 8 8 8 8 8 10 8 8 8 8 10 9 10 8 8 12 17 8 8 8 8 8 8 8 6 8 6 6 8 6 8 8 8 10 8 8 8 8 8 8 8 8 8 7 7 7 7 8 10 10 8 8 8 8 8 8 8 8 12 11 14 22 15 19 14 14 12 12 13 9 6 6 8 8 8 8 8 8 8 8 11 11 10 8 8 8 8 10 17 14 14 15 15 16 17 17 10 8 8 8 8 8 12 13 13 14 12 12 17 18 24 15 10 10 10 9 10 12 6 6 6 6 8 10 8 8 8 8 8 8 8 9 9 8 10 9 8 8 8 8 6 6 8 10 8 7 7 6 10 10 11 10 8 8 9 9 10 10 8 8 8 8	Open. Hide. 12 12 9 9 9 9 18 9 9 11 14 18 9 9 9 12 12 23 22 12 11 27 25 39 34 34 25 24 35 34 25 20 32 32 37 27 30 22 12 12 19 14 17 19 23 28 34 57 23 21 11 26 26 33 33 22 23 23 37 27 30 13 12 9 10 10 15 21 25 17 13 13 17 17 33 23 23 14 14 23 34 43 35 35 35 39 27 27 12 12 12 34 23 32 32 43 43 43 39 39 27 19 10 10 10 23 19 37 37 48 48 48 50 50 47 46 25 27 16 10 10 10 10 10 15 17 22 22 21 19 21 11 11 12 20 23 12 11 11 12 22 23 15 11 9 11 11 9 9 9 9 9 9 11 9 3 0 3 8 8 9 9 9 9 13 12 11 11 10 19 19 26 12 10 10 9 9 9 9 9 9 8 11 12 8 8 10 21 10 11 9 14 11 13 19 19 16 13 10 10 8 8 13 13 10 11 9 12 9 11 22 23 13 10 12 10 10 10 9 7 7 7 8 8 18 22 21 10 9 9 9 9 11 11 9 9 9 13 6 6 6 7 6 9 10 12 11 11 10 10 10 15 11 10 12 13 11 13 12 13 7 8 8 10 8 8 8 7 10 16 23 16 9 9 8 8 7 6 6 6 6 6 6 10 15 8 8 8 7 9 9 9 9 8 8 10 13 11 8 6 6 8 10 18 18 15 15 22 11 11 9 10 8 8 7 8 8 7 8 8 8 9 19 17 12 8 8 8 10 10 8 9 9 9 8 8 9 10 10 17 19 17 17 11 8 8 8 8 6 11 10 10 8 8 6 6 9 9 9 9 9 10 10 9 18 11 10 9 9 9 9 9 8 9 9 10 14 12 22 17 14 14 17 19 24 15 16 9 8 8 13 11 12 19 23 22 19 19 12 14 11 10 10 14 13 8 6 6 8 8 12 10 12 9 9 17 19 33 30 20 17 15 10 11 15 8 8 8 8 8 8 10 10 14 12 12 15 19 23 20 10 10 10 8 8 8 8 8 8 8 19 22 28 25 27 27 26 32 13 11 8 8 8 8 11 12 19 8 8 8 8 13 10 10 11 12 16 19 10 10 10 12 10 10 9 9 11 15 11 10 8 8 12 8 8 8 11 11 11 11 10 10 12 14 14 16 15 12 10 13 8 8 8 8 10 8 8 8 11 13 15 19 12 10 9 9 9 10 10 10 12 17 17 25 22 21 18 14 9 8 8 8 8 8 8 8 10 8 8 8 8 10 10 10 9 9 9 9 10 10 11 11 9 9 9 11 9 9 9 10 9 11 11 8 10 8 8 6 6 10 9 8 8 8 8 10 14 21 18 14 10 8 6 6 6 6 6 6 9 9 9 11 9 10 8 10 7 6 8 7 6 6 6 8 8 8 11 23 23 30 12 12 6 6 8 8 9 10 10 11 11 8 10 10 15 9 10 13 8 6 6 6 8 8 6 6 9 14 9 9 10 9 8 8 8 8 8 8 9 10 16 16 11 9 10 8 8 10 17 21 25 19 9 8 8 8 10 8 8 8 8 8 8 10 15 30 10 8 8 8 10 10 10 11 10 10 11 10 9 9 9 9 9 9 10 10 11 12 12 18 13 10 10 12 11 10 10 10 8 8 6 6 8 8 8 10 15 8 8 7 8 8 9 9 10 8 8 8 8 9 11 11 10 8 8 6 6 8 8 8 8 8 8 8 8 18 12 11 10 12 14 11 10 10 9 12 9 9 10 10 8 8 8 13 8 9 8 8 13 9 8 8 8 9 16 15 10 11 11 9 11 10 10 10 15 10 10 12 9 9 11 12 8 8 8 11 10 10 10 9 8 8 7 8 10 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no183_h10.b1 MSMg01no183_h10.b1 CHROMAT_FILE:
MSMg01no183_h10.b1 PHD_FILE: MSMg01no183_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:29 2005
         (108 letters)



>mm_chr9_66728973_66729479
          Length = 507

 Score =  178 bits (92), Expect = 9e-50
 Identities = 101/104 (97%), Gaps = 1/104 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttgccttttaaaagctgcttgcctgcggatcatatttaacttccacataaag 64
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcatttggcttttaaaagctgcttgcctgcggatcgtatttaacttccacataaag 264

                                                       
Query: 65  gacaaaagttactttgggggtgtttttggttttattttgttttg 108
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 gacaaaagttactttgggg-tgtttttggttttattttgttttg 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 507
Length adjustment: 8
Effective length of query: 100
Effective length of database: 499
Effective search space:    49900
Effective search space used:    49900
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information