BAC Information

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BAC

Clone NameMSMg01-183N02
Chromosome9 (Build37)
Map Location 28,684,446 - 28,808,681
singlet/doubletdoublet
Overlap geneOpcml, Hnt
Upstream genenone
Downstream geneLOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183N02.T7 (MSMg01no183_n02.b1)MSMg01-183N02.TJ (MSMg01no183_n02.g1)
ACCAG376291AG376292
length723736
length of high quality
(start - end)		640 (45 - 684)656 (78 - 733)
definitionCHROMAT_FILE: MSMg01no183_n02.b1 PHD_FILE: MSMg01no183_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:56 2005CHROMAT_FILE: MSMg01no183_n02.g1 PHD_FILE: MSMg01no183_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,808,046 - 28,808,681)(28,684,446 - 28,685,101)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAAACAATGGAAGTCATTCTATGAAGCAGTTTGACTTAATAGCT
CAGATCCCAAAGGATAGGTGTCTCCTGCTAGGATCGAGTGTGTAGTCAGG
CTCTGCTTCTGTCTGCTGTCCACCCTAATGGGCATCCAAACACTTCCTTG
CCTCCAGTTCACTTCTAGATAAAAAAAGAAAAATTAAGGGGGGAGACGCT
GTGGGTGATAGACAATGGTCAGTATAACTAGAGGCAGGTATACGGGGCCT
GGGTTAGGCCAGGATCTCTTACTTGTTCCCAAGACCATCTCAGGGCACAG
TAAGCACTACAAGCTGCTTTCTGCCTTAACAGTGGCTTATTTTTAATTTT
CTTTTAGAAGTGAAAACTACAGCCCTGACCCCTTGGAAAGGTTGGTATAT
TTACTTTTCAGGCAGCTGATGCCTTAGTGGGAATGGGGTACGTAGTTTTC
TGCACCTCTGCCTAGATGCCTTCTTCTCTAAGCTCACTCTCAAGCATTCT
AGCAGGACTTCTCCCTGATCTGCTATTCAGGTAGATTAACCCAATTCCCA
GTGATGCCACATCCTATGAGTTGCTTCCACTTGCACACTTTAACTGGTCC
GTACGGTGGCACTAATGAGCATCTGCTATAGTCAGAGGAGCTGGGTTCTG
CGATCCTGGCACAGGGCTTGTCN

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGCACTTTCAATTAATTACTGA
AATCTTTGTTATTCCATCATCTGAAAGAAGCCACACAAGTAAATATCTAA
ATAAAACCCCAAAGCCATCTGTAACATTTCAATTATTGCTACAGAACTCA
GCCTATGGAATTCTCCCCAAGAGGCATCTTTCCATTCCGGGGCTTCTTAA
ACATAGTATATTTGATATTTGTAACCTTATTTAAAGGACTCAAGGTCATC
TTTGTGAACAATGCTTATTGCATCAAGCTGCACTTTGGGATAGTCTTCAG
AGCTATTGAAGTGCATGGTTATTTGCTTCTGCAAAAGATAGCCACGAGTT
GATACGCTTTTGAATTCGTGTGTCCACTTTTTATAGTTTATTTTTCCCTA
TTCTTCCTGGCTGTCAGCATAGCAGTCATCAATTTTCACTGTTGAAATTT
GACTTGTCTTTAGTCAGCATACATCTTCCTGCTGTCTGCTCAGTGTCTCT
AAGTTCTTGTTTCGGCCTTGGCTCTCAAAGTAAGATTCATCTGGGTAGTC
CATCCTTTCGTCTTAGCTCCAAACTTTGTCTCTGTAACTCCTTTCATGGG
TATTTTGTTCCCTATTCTAAGGAGGAATAAAGTATCCACCCATTGGTCTT
CCCTCTTCTTGATTTTCTTGTGTTTTGCAAATTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_n02.b1 MSMg01no183_n02.b1 CHROMAT_FILE:
MSMg01no183_n02.b1 PHD_FILE: MSMg01no183_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:56 2005
         (640 letters)



>mm_chr9_28807842_28808881
          Length = 1040

 Score = 1199 bits (620), Expect = 0.0
 Identities = 632/636 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaaacaatggaagtcattctatgaagcagtttgacttaatagctcagatccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gaattcagtaaacaatggaagtcattctatgaagcagtttgacttaatagctcagatccc 781

                                                                       
Query: 65  aaaggataggtgtctcctgctaggatcgagtgtgtagtcaggctctgcttctgtctgctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aaaggataggtgtctcctgctaggatcgagtgtgtagtcaggctctgcttctgtctgctg 721

                                                                       
Query: 125 tccaccctaatgggcatccaaacacttccttgcctccagttcacttctagataaaaaaag 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 720 tccaccctaatgggcatccaaacactttcttgcctccagttcacttctagataaaaaaag 661

                                                                       
Query: 185 aaaaattaaggggggagacgctgtgggtgatagacaatggtcagtataactagaggcagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaaaattaaggggggagacgctgtgggtgatagacaatggtcagtataactagaggcagg 601

                                                                       
Query: 245 tatacggggcctgggttaggccaggatctcttacttgttcccaagaccatctcagggcac 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tatacagggcctgggttaggccaggatctcttacttgttcccaagaccatctcagggcac 541

                                                                       
Query: 305 agtaagcactacaagctgctttctgccttaacagtggcttatttttaattttcttttaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agtaagcactacaagctgctttctgccttaacagtggcttatttttaattttcttttaga 481

                                                                       
Query: 365 agtgaaaactacagccctgaccccttggaaaggttggtatatttacttttcaggcagctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agtgaaaactacagccctgaccccttggaaaggttggtatatttacttttcaggcagctg 421

                                                                       
Query: 425 atgccttagtgggaatggggtacgtagttttctgcacctctgcctagatgccttcttctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgccttagtgggaatggggtacgtagttttctgcacctctgcctagatgccttcttctc 361

                                                                       
Query: 485 taagctcactctcaagcattctagcaggacttctccctgatctgctattcaggtagatta 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 360 taagctcactctcaagcattctagcaggacttctccctgatctgctattcagctagatta 301

                                                                       
Query: 545 acccaattcccagtgatgccacatcctatgagttgcttccacttgcacactttaactggt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acccaattcccagtgatgccacatcctatgagttgcttccacttgcacactttaactggt 241

                                               
Query: 605 ccgtacggtggcactaatgagcatctgctatagtca 640
           |||||| |||||||||||||||||||||||||||||
Sbjct: 240 ccgtacagtggcactaatgagcatctgctatagtca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_n02.g1 MSMg01no183_n02.g1 CHROMAT_FILE:
MSMg01no183_n02.g1 PHD_FILE: MSMg01no183_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:56 2005
         (656 letters)



>mm_chr9_28684246_28685301
          Length = 1056

 Score = 1261 bits (652), Expect = 0.0
 Identities = 655/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcactttcaattaattactgaaatctttgttattccatcatctgaaagaagccacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcactttcaattaattactgaaatctttgttattccatcatctgaaagaagccacaca 260

                                                                       
Query: 61  agtaaatatctaaataaaaccccaaagccatctgtaacatttcaattattgctacagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaatatctaaataaaaccccaaagccatctgtaacatttcaattattgctacagaac 320

                                                                       
Query: 121 tcagcctatggaattctccccaagaggcatctttccattccggggcttcttaaacatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagcctatggaattctccccaagaggcatctttccattccggggcttcttaaacatagt 380

                                                                       
Query: 181 atatttgatatttgtaaccttatttaaaggactcaaggtcatctttgtgaacaatgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttgatatttgtaaccttatttaaaggactcaaggtcatctttgtgaacaatgctta 440

                                                                       
Query: 241 ttgcatcaagctgcactttgggatagtcttcagagctattgaagtgcatggttatttgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcatcaagctgcactttgggatagtcttcagagctattgaagtgcatggttatttgct 500

                                                                       
Query: 301 tctgcaaaagatagccacgagttgatacgcttttgaattcgtgtgtccactttttatagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgcaaaagatagccacgagttgatacgcttttgaattcgtgtgtccactttttatagt 560

                                                                       
Query: 361 ttatttttccctattcttcctggctgtcagcatagcagtcatcaattttcactgttgaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatttttccctattcttcctggctgtcagcatagcagtcatcaattttcactgttgaaa 620

                                                                       
Query: 421 tttgacttgtctttagtcagcatacatcttcctgctgtctgctcagtgtctctaagttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgacttgtctttagtcagcatacatcttcctgctgtctgctcagtgtctctaagttct 680

                                                                       
Query: 481 tgtttcggccttggctctcaaagtaagattcatctgggtagtccatcctttcgtcttagc 540
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttcggccatggctctcaaagtaagattcatctgggtagtccatcctttcgtcttagc 740

                                                                       
Query: 541 tccaaactttgtctctgtaactcctttcatgggtattttgttccctattctaaggaggaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccaaactttgtctctgtaactcctttcatgggtattttgttccctattctaaggaggaa 800

                                                                   
Query: 601 taaagtatccacccattggtcttccctcttcttgattttcttgtgttttgcaaatt 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaagtatccacccattggtcttccctcttcttgattttcttgtgttttgcaaatt 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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