BAC Information

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BAC

Clone NameMSMg01-184J19
Chromosome9 (Build37)
Map Location 117,353,812 - 117,354,122
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184J19.T7 (MSMg01no184_j19.b1)MSMg01-184J19.TJ (MSMg01no184_j19.g1)
ACCAG376846AG376847
length718844
length of high quality
(start - end)		316 (60 - 375)88 (77 - 164)
definitionCHROMAT_FILE: MSMg01no184_j19.b1 PHD_FILE: MSMg01no184_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:03 2005CHROMAT_FILE: MSMg01no184_j19.g1 PHD_FILE: MSMg01no184_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAANNNGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTCAACAAGGGCTGTATGATTTCTAACTTTCC
AGGAATAAAATGAGCACCATGCCTGCATGTCCCCACTGGATCATTAGGCT
TTAAAAGATTCACCCGTGCAAAACATAGGAAGTTGGTTAAATGAAGAGCT
AGTCTGGGGCAGGAAAACAACAGAGAGGAGAAAACAGTCATTTTCCTTCA
GAGCTGAAATTGCACGGAGGATAATTTCCCTCCGGTGGCATTCTGCAAAG
GGGAAATTTTATCTCAAGCATTTTATCGCAGATGATTTGGTTTAAGTAAG
AGCAATTTCATCCATGGGACTCCTATGACTAAAGCTGTCCCTGGCAGCCC
TGTACCTGTGCAGGATGCTCAGGTGACTCAACCAGGATCTTGGTGTATGT
AACTGTTTCATGATACCATACATTTATATAAAGAATTTCAGTCATTTCTC
CCCTGTTCCCTTCCATCATCCATGTCCCTTCCCTGTTTCTGATCAGCAAG
TCCCTTCCTTCTTTCTTCTCTTTGTTATGTGTGTGCCTCACTGCGTTTCG
TCAGTTCCTTGTGTGAGTGTGGTTGTGTGNNNTGCAAACTANTTTNTANC
TCTCCTTCCCCCATATCCCCTCTCTTTTTTTTTCTCCCCCTCCTTCACTA
TTTCTTTCTTCCAATATA

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGTGTGTGTCTCTCTTTCAC
TCTGTTTCTGTTTCTGTCTCTGTCTCTCTCTGTCTCTGTGGTGTGGGTAT
GTGTTTGTGTGTGNNNAAANNANNAAANNNAAAAAATTATTTTTTATTTT
TTAAATTTTTTTTAATATATTTTTATATTAATAAAATAAATATTTTTTTT
TTTTTAAACAATATATAAAAATTTTTTTAATTAAATATTTAAAAAATANT
TTTATTTCTTTTTTTTATTTTTTAAAAATTTATTAAAAATAATAATTTAT
TTTTTTTTTTCCCCCCCCCCCCCCCCCCCTATATATTATATAATTAATAT
TATAAATTATTTTTTTCCCCCCCAAAAAAAAAAAAATCTTTTCCTTTTTC
TTTATTTCATATTCTTTTTCATACCAAATTCACAACAAACCAAACAATAT
CCTTTACTTTATTATATAACAAATATTATACCAATTTATATCTTAAATAC
TCAATCTTCTTCAAAAATTAAAATTCCAATATAATATATATAAAATATAT
TTATATAAAATATCCACAATACTCCTTTTTAATATTTAATTATTTATACA
TAAATTTTTCTAATACTCATATTCTTTTAAATCCTTCAATAAATATATTA
TATAATATTAACTTTAAACAAATACTACTTATATATTTTTAACCTTATAA
TAAATTTTATTTATATACATATAAACTTAACTTATTTATCATATTATTTT
ACTCCCTTATCTTTATTAATTATTATAACTATCACAAATTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_j19.b1 MSMg01no184_j19.b1 CHROMAT_FILE:
MSMg01no184_j19.b1 PHD_FILE: MSMg01no184_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:03 2005
         (316 letters)



>mm_chr9_117353607_117354322
          Length = 716

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctcaacaagggctgtatgatttctaactttccaggaataaaatgagcaccatgcct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctcaacaagggctgtatgatttctaactttccaggaataaaatgagcaccatgcct 265

                                                                       
Query: 66  gcatgtccccactggatcattaggctttaaaagattcacccgtgcaaaacataggaagtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcatgtccccactggatcattaggctttaaaagattcacccgtgcaaaacataggaagtt 325

                                                                       
Query: 126 ggttaaatgaagagctagtctggggcaggaaaacaacagagaggagaaaacagtcatttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggttaaatgaagagctagtctggggcaggaaaacaacagagaggagaaaacagtcatttt 385

                                                                       
Query: 186 ccttcagagctgaaattgcacggaggataatttccctccggtggcattctgcaaagggga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccttcagagctgaaattgcacggaggataatttccctccggtggcattctgcaaagggga 445

                                                                       
Query: 246 aattttatctcaagcattttatcgcagatgatttggtttaagtaagagcaatttcatcca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 446 aattttatctcaagcattttatcgcagatgatttggtttaagtaagagcgatttcatcca 505

                      
Query: 306 tgggactccta 316
           |||||||||||
Sbjct: 506 tgggactccta 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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