Query= MSMg01no185_a07.b1 MSMg01no185_a07.b1 CHROMAT_FILE:
MSMg01no185_a07.b1 PHD_FILE: MSMg01no185_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:37 2005
(279 letters)
>mm_chr9_115768169_115768847
Length = 679
Score = 449 bits (232), Expect = e-130
Identities = 261/272 (95%), Gaps = 2/272 (0%)
Strand = Plus / Plus
Query: 9 tcaagagagctgtcccagaatatatagatgctgatatgtcttgggagaaaaaatcagncc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 209 tcaagagagctgtcccagaatatatagatgctgatatgtcttgggagaaaaaatcagtcc 268
Query: 69 atttatacccacgaacacaaactgtcatatttaccacacaagccagaacttgagaatctc 128
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 269 atttatacccatgaacacaaactgtcatattcaccacacaagccagaacttgagaatctc 328
Query: 129 agcgcctgagaggcagaggaaaaaaggtctgagtgagtatgcc-cnagttgcgtttgcaa 187
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 329 agcgcctgagaggcagaggaaaaaaggtctgagtgagtatgccac-agttgcgtttgcaa 387
Query: 188 accaatcctgaccagaggaacccagctatgccgttgctactactgtccacttanacgccg 247
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct: 388 accaatcctgaccagaggaagccagctatgccgttgctactactgtccgcttagacgccg 447
Query: 248 acgnggnagcaccacttgcttagactcaaagt 279
||| || |||||||| ||||||||||||||||
Sbjct: 448 acgtggtagcaccacctgcttagactcaaagt 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no185_a07.g1 MSMg01no185_a07.g1 CHROMAT_FILE:
MSMg01no185_a07.g1 PHD_FILE: MSMg01no185_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:37 2005
(283 letters)
>mm_chr9_115916298_115916976
Length = 679
Score = 424 bits (219), Expect = e-123
Identities = 271/301 (90%), Gaps = 22/301 (7%)
Strand = Plus / Minus
Query: 1 caggacagcc----agggctacatagtaaagccatatcttgagtgtaaaaaattaaagtt 56
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caggacagccagggagggctacatagtaaagccatatcttgagtgtaaaaaattaaagtt 432
Query: 57 gaattgatttgtccttcttctgtgcttgcaaagcacagcaggcagagatgggaactatgg 116
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct: 431 gaattggtttgtccttcttctgtgcttgtaaagcacaataggcagagatgggaactgtgg 372
Query: 117 gtctctggaccctcagcatctgtctgattcaatgtaggatgaagaagttttgatttcttt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtctctggaccctcagcatctgtctgattcaatgtaggatgaagaagttttgatttcttt 312
Query: 177 gagaaaaaaaaatctggattggggaaggctaatttttaaagtatataattaaatgtatac 236
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gag---aaaaaatctggattggggaaggctaatttttaaagtatataattaaatgtatgt 255
Query: 237 atgtatgtatg---------------gtatgtatgggacaggatctttccatacagccat 281
||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 254 atgtatgtatgtatatatgtatgtatgtatgtatgagacaggatctttccatacagccat 195
Query: 282 g 282
|
Sbjct: 194 g 194
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 679
Length adjustment: 9
Effective length of query: 274
Effective length of database: 670
Effective search space: 183580
Effective search space used: 183580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
