BAC Information

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BAC

Clone NameMSMg01-185C21
Chromosome9 (Build37)
Map Location 79,353,542 - 79,353,784
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
Downstream geneLOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185C21.T7 (MSMg01no185_c21.b1)MSMg01-185C21.TJ (MSMg01no185_c21.g1)
ACCAG377250AG377251
length713709
length of high quality
(start - end)
647 (46 - 692)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no185_c21.b1 PHD_FILE: MSMg01no185_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:49 2005CHROMAT_FILE: MSMg01no185_c21.g1 PHD_FILE: MSMg01no185_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACCTGAGGAATACCAAATGGCTGAGAAGCACCTGAAAAAATGT
TCAGCATCCTTAATCATCTGAGCAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCTTTCCTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGATATAGTACTACCAGAGGATCCTGCAATACCTCTCCACTATG
CTCATAGCAGCCTTATTTATAATACCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAACGCACACAAAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTACGAATTTCCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGGGAGGTAACCCAATCACAAAA
GAACTCACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACT
TAGAATACCCAAGATATAAGATACAATTTGTAAAACACATGAAAGTCAAG
AAGAATGGAGACCAAAGTGTGGACACTGTGCCCCTTCTTAGAATTGCGAA
CAAAACATCCATG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATTTCCAGACAAGTTTGGAAAAAT
TACTGCCAGTTAGGATAGGCACACTTCTTGGCTTTCCTTGAGGGTGTTTG
TTGAGGTACTGCCTATCTCTTCCAAATCACAGGGGCGATGATACTTTCTG
ATCACATGGATAACCAAGGTTCTTCATCCTGAAAACAACCATAAGAACTC
ATCCTCTGTCAAAAAAAATTGTTCTGTCATAAAGTCTGCAAGGAGATATT
GCTTGGTATTGCTTGGAATTTTTTTTTCATGAAAATCTTCTTAGCAGTGC
TCTTCTTAGGGATCCACTGAAAGCTTAAAACAATAAAGCATTGGGTATGA
ATCACCAGGTTCAACAGAACAAAACACTAAAAAATCTAGTGGACTAGGCT
TGTTTTGATACTTTACATGCACACCAGAAATCACATGCCTGGCATTTATA
AGAACCTTTAGAGCAGGAGGAAAAACGAATTGATACACACATTTAATTTA
CTAAGGTAATCCAGCTGGCAGTGAACTTTATACAAGTTTCTTCCGATTTT
GATGGTCTTAAGCAAGGTATTTTGTGTTTTAGTTGTTGACAATGCCAATT
TAGATGACATACTATATATTTCTCCGAACAGAGAGATTTCCTTACCTTAC
AGACTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_c21.g1 MSMg01no185_c21.g1 CHROMAT_FILE:
MSMg01no185_c21.g1 PHD_FILE: MSMg01no185_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:49 2005
         (243 letters)



>mm_chr9_79353342_79353984
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatttccagacaagtttggaaaaattactgccagttaggataggcacacttcttggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttatttccagacaagtttggaaaaattactgccagttaggataggcacacttcttggctt 384

                                                                       
Query: 61  tccttgagggtgtttgttgaggtactgcctatctcttccaaatcacaggggcgatgatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tccttgagggtgtttgttgaggtactgcctatctcttccaaatcacaggggcgatgatac 324

                                                                       
Query: 121 tttctgatcacatggataaccaaggttcttcatcctgaaaacaaccataagaactcatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttctgatcacatggataaccaaggttcttcatcctgaaaacaaccataagaactcatcc 264

                                                                       
Query: 181 tctgtcaaaaaaaattgttctgtcataaagtctgcaaggagatattgcttggtattgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctgtcaaaaaaaattgttctgtcataaagtctgcaaggagatattgcttggtattgctt 204

              
Query: 241 gga 243
           |||
Sbjct: 203 gga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)