Query= MSMg01no185_f24.b1 MSMg01no185_f24.b1 CHROMAT_FILE:
MSMg01no185_f24.b1 PHD_FILE: MSMg01no185_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:03 2005
(318 letters)
>mm_chr9_54823725_54824442
Length = 718
Score = 569 bits (294), Expect = e-166
Identities = 303/306 (99%), Gaps = 1/306 (0%)
Strand = Plus / Minus
Query: 13 aggacaacttagggaagtcagtcctctctttcc-atacatgggtcccagggatcaaactt 71
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 715 aggacaacttagggaagtcagtcctctctttccaatacatgggtcccagggatcaaactt 656
Query: 72 atacttttattagattgcaatagctgtattcatgtttaactaaacacgatctatacatat 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atacttttattagattgcaatagctgtattcatgtttaactaaacacgatctatacatat 596
Query: 132 gtaatatattcatataataaatatacatttaaattaagtaacttcatttaaatatacatt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtaatatattcatataataaatatacatttaaattaagtaacttcatttaaatatacatt 536
Query: 192 tacatataaaccatacatgaaactcagctatcctaatagaataatcacatagtgcaacat 251
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 535 tacatataaaccatacatgaaactaagctatcctaatagaataatcacatagtgcaacat 476
Query: 252 gccagagatttgactgctagtagaagaactacagttaacaagcaaattataattcactta 311
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 475 gccagagatttgactgctagtagaagaacaacagttaacaagcaaattataattcactta 416
Query: 312 taaaat 317
||||||
Sbjct: 415 taaaat 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_f24.g1 MSMg01no185_f24.g1 CHROMAT_FILE:
MSMg01no185_f24.g1 PHD_FILE: MSMg01no185_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:03 2005
(292 letters)
>mm_chr9_54647585_54648276
Length = 692
Score = 478 bits (247), Expect = e-139
Identities = 274/291 (94%), Gaps = 13/291 (4%)
Strand = Plus / Plus
Query: 1 actcaccacctgccaatcccgcactgcaggaggggcatgccacactaacttacctcccta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 actcaccacctgccaatcccgcactgcaggaggggcatgccacactaacttatctcccta 260
Query: 61 cagggagacataaaatttgcctgtccataaagcattttattattcagtctgaacactgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggagacataaaatttgcctgtccataaagcattttattattcagtctgaacactgtg 320
Query: 121 tttcatcgccgtgtagcatgtgtctcgttataccagacactaacatgtatctgaaaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcatcgccgtgtagcatgtgtctcgttataccagacactaacatgtatctgaaaatga 380
Query: 181 aattctggaaggttgccctggcttatggaatgcctgcggtgtggtcttggaatggtggat 240
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 381 aattctggaaggttaccctggcttgtggaatgcctgcagtgtggtcttggaatggtggat 440
Query: 241 atccgagccctagcctatggacgtggctctgcattcatggagcccttagtg 291
|||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 atccgagccctagc-------------tctgcattcatggagcccttagtg 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
