NNAATGCCCCNNNNTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCTTTCCCATATGTTACCATGTTACAAG
TCACCTGGAAAAGCCTTCCTTTAACACATACACATGTGCACAATCTCTCT
TTCTCCCCAATTTACAAACACTCTTACAAAACAAATCCCCAAGTAGATAT
GACCTCTTATTTTCCACTGTATTTATATCTGCACTTTTGTGACATTTAAT
GCACAATCCTTCAGTTTTCTTTCTGTCCATCCATCAGTTCCTTAAGCAGT
TCCTTAAGGAGAAGTGTGCAACTAATTTTCTTTCTTCCCTGTGCCTGACA
GAAAGCACCAACAGTGAAAAGAACCATTCCTGAACCACTGCCCTGTACAG
CAGCACTGTGCCAGAGACCATACCAGCAGGTAAAGAGCACAAAACCTTGT
CAGGAAGAGCATAAAACCTACTACAAACACTTTTTACAGCAAGGATGGTG
AGCAAGGGAGGCAAATGTGAAATATATTTATTAATAACTATTAACTGCTT
TAAAGACATGGCCAACACAGGATTTTTGAATCAGCTATAAAAATACTTTA
TTTTAATGACTAGCTTTAATTGCTTTCCTGCAGAGAAACAATATTAAACC
CCTAACTAACAGTTGTTCACAACCGAAGACCTCAGAAATGCCTTCTTTTC
TCTTTCTGATATCACGCTGAAGTAGCAAGCACAAA

CCTTCGCTCNNNCCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCAAA
CCACTTTCAGATATTAAAGTCCTCTCTTTGATCTTTTTACCTATTTTCTC
TTCAGACAGGTCATATTGTAGTTTGTTTAACAGAATAAAGGCTGTGGGCA
AGACAAGTGGCCATCATTCCCCAGGGCAGGTGAGCACTGTTATTTCAGCA
GTAAAGTCCCCCTTATTAAAATGTCTGTCACCAGAGCTTTAGAAGCAGCT
GACCTTCTCACAAAGGGGGCTGTAAAACCACAGCCTTGTTTTTATTCTTT
GTCAGGGACCAAGAAATGCCCATCTTTTTTGTTCTACCCTCACCGAGTGG
CCAGCACAGGAGAGGCAGAACACAATGGGAAACTCAACGAAAAGAATGAC
TTTACAATATGGATCTCCCATCCTTTTTATGAGAAACTGTTGCATCCCTA
AAGCAACATTTCTAGCCCAGTGGTTGCCTGGACATTACAAAGGTAAATGT
GTCAGGGAAGCTTCCAAAATTGCTTCCAAGATAAACTCTGTACTTATTCA
GATGCAAATACTGCCTATCTGCTGCTTCACCTTCTCTGGTTTAGCTAATC
CAGGTCACCAATTCTTTGTTGGATACAACCTACACATTGGGATTTATGTC
CTTTGCTCTTTCTGGATCTAGAACCAAAATGTTGCCATTAGTCAN

Query= MSMg01no185_l05.b1 MSMg01no185_l05.b1 CHROMAT_FILE:
MSMg01no185_l05.b1 PHD_FILE: MSMg01no185_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:28 2005
         (671 letters)



>mm_chr9_16058954_16060024
          Length = 1071

 Score = 1266 bits (655), Expect = 0.0
 Identities = 664/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcccatatgttaccatgttacaagtcacctggaaaagccttcctttaacaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcccatatgttaccatgttacaagtcacctggaaaagccttcctttaacaca 264

                                                                       
Query: 65  tacacatgtgcacaatctctctttctccccaatttacaaacactcttacaaaacaaatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacacatgtgcacaatctctctttctccccaatttacaaacactcttacaaaacaaatcc 324

                                                                       
Query: 125 ccaagtagatatgacctcttattttccactgtatttatatctgcacttttgtgacattta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaagtagatatgacctcttattttccactgtatttatatctgcacttttgtgacattta 384

                                                                       
Query: 185 atgcacaatccttcagttttctttctgtccatccatcagttccttaagcagttccttaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgcacaatccttcagttttctttctgtccatccatcagttccttaagcagttccttaag 444

                                                                       
Query: 245 gagaagtgtgcaactaattttctttcttccctgtgcctgacagaaagcaccaacagtgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaagtgtgcaactaattttctttcttccctgtgcctgacagaaagcaccaacagtgaa 504

                                                                       
Query: 305 aagaaccattcctgaaccactgccctgtacagcagcactgtgccagagaccataccagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaaccattcctgaaccactgccctgtacagcagcactgtgccagagaccataccagca 564

                                                                       
Query: 365 ggtaaagagcacaaaaccttgtcaggaagagcataaaacctactacaaacactttttaca 424
           ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 565 ggtaaagagcagaaaaccttgtcaggaagaccataaaacctactacgaacactttttaca 624

                                                                       
Query: 425 gcaaggatggtgagcaagggaggcaaatgtgaaatatatttattaataactattaactgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaaggatggtgagcaagggaggcaaatgtgaaatatatttattaataactattaactgc 684

                                                                       
Query: 485 tttaaagacatggccaacacaggatttttgaatcagctataaaaatactttattttaatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttaaagacatggccaacacaggatttttgaatcagctataaaaatactttattttaatg 744

                                                                       
Query: 545 actagctttaattgctttcctgcagagaaacaatattaaacccctaactaacagttgttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actagctttaattgctttcctgcagagaaacaatattaaacccctaactaacagttgttc 804

                                                                       
Query: 605 acaaccgaagacctcagaaatgccttcttttctctttctgatatcacgctgaagtagcaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acaaccgaagacctcagaaatgccttcttttctctttctgatatcacgctgaagtagcaa 864

                  
Query: 665 gcacaaa 671
           |||||||
Sbjct: 865 gcacaaa 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no185_l05.g1 MSMg01no185_l05.g1 CHROMAT_FILE:
MSMg01no185_l05.g1 PHD_FILE: MSMg01no185_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:28 2005
         (296 letters)



>mm_chr9_16198612_16199307
          Length = 696

 Score =  540 bits (279), Expect = e-158
 Identities = 291/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttacaatatggatctcccatcctttttatgagaaactgttgcatccctaaagcaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctttacaatatggatctcccatcctttttatgagaaactgttgcatccctaaagcaacat 436

                                                                       
Query: 61  ttctagcccagtggttgcctggacattacaaaggtaaatgtgtcagggaagcttccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttctagcccagtggttgcctggacattacaaaggtaaatgtgtcagggaagcttccaaaa 376

                                                                       
Query: 121 ttgcttccaagataaactctgtacttattcagatgcaaatactgcctatctgctgcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttgcttccaagataaactctgtacttattcagatgcaaatactgcctatctgctgcttca 316

                                                                       
Query: 181 ccttctctggtttagctaatccaggtcaccaattctttgttggatacaacctacacattg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 315 ccttctctggtttagctaatccaggtcaccaattctttgttggacacaacctacacattg 256

                                                                  
Query: 241 ggatttatgtcctttgctctttctggatctagaaccaaaatgttgccattagtca 295
           |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 255 ggatctatgtcctttgctctttctggatctagaatcaaaatattgccattagtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)