BAC Information

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BAC

Clone NameMSMg01-185N13
Chromosome9 (Build37)
Map Location 14,750,222 - 14,914,413
singlet/doubletdoublet
Overlap genePanx1, Hephl1
Upstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4
Downstream gene2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185N13.T7 (MSMg01no185_n13.b1)MSMg01-185N13.TJ (MSMg01no185_n13.g1)
ACCAG377711AG377712
length782783
length of high quality
(start - end)
236 (144 - 379)289 (90 - 378)
definitionCHROMAT_FILE: MSMg01no185_n13.b1 PHD_FILE: MSMg01no185_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:39 2005CHROMAT_FILE: MSMg01no185_n13.g1 PHD_FILE: MSMg01no185_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,914,178 - 14,914,413)(14,750,222 - 14,750,507)
sequence
GCACAAANNNNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTTAGGTGAACCAGAAACTAGACACGTAGAA
GCCATTTCTGTGGACCAGATCTGAGTGGGGCATTCCCCCCTCAGTTTTAG
CTCAATAGAAGTGAGTTCCTGGCTTTGGAAGCAGCTGGCACAGGTGATGT
CACATTGATGATAGCAGGGTTTCAAGGCTTTACTTTTTACAGAGGGTCAT
CTATGAGAAGAGCTATGGCTATCTCTTGAAAGGGGAATGCAGATTAATCC
ATGGTGCTTACTGAAGGGAACCATGGTAGGTGACTCATGGATAGTTACTA
AGGAGTATCTTTGTAGTTGATAGATTTGATTGTACCCTCCCCACCATATC
CAGGCCATGGTGGAAGGACATATATGATTCCCCCCCCCACAATCTGAACT
CACTCAAGCACCATGGCAACATAGGAGAATGCCCGTCAACATATATTGAA
TAACTTTTCTTTCCACAGAACTGTTTCAGTGGCAGGATCTCATTGCACCT
TTTTAGTAATATCAAGTCCCTTTTACCGGATGTTACAGATTCCTTCCTTG
TCTAGCCATTTGCTCGCCCATTTTCCACTTATTGCTTTCCCCCTCCTCTC
ATTTCCTCTCTCCCTTTTCTTCTCTCTGCTCCCCCCATTTTCTCCTCTCT
TTCTTGATTTACCTCCTTTCTATTTTTGTCCCTTTTCTTTTTGTTCTCAC
AGCACTCTTTTTCGACCCTTTATTTTTCTTTC
CCTCCCCCNCCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCTAGGA
GATAAAATTGGCAAAGCCAGGTAGGTTGGGGCAGGGTGTATACATAGCGT
CCATCCCAACACCGACACTTGTCTTAAAATAATGAGCCCCACAGATGGAA
AACGTGCTACACTGCTGTGAGCAGTATTGTGCTACAAACAAAACTCACTC
CAGGGAGAAATTGATATTTAGGAAACGTGTTTCATTCCTGTGAATTCACC
TGAGGTCAAATTAATTGTGTGGCATGTGTTTCCCAGTGGTTAAGAGAGCC
CAGCATACTTTGATTAACCAAATGATTTTTTTCCCCCACCCCCCCCGTCT
GAAGTAATGATTAATAGTTCTACGGTCATCCCCCCCCCAAAAGAATAGCT
ACACTGTAGCAATTCACAGCATCTCCCTCAAACCCTGAATGGAACTTCCT
CTTGGAGTAGATCTTGTCTGAAATAGACAGGATTCTTGCTCTTCAGTGAT
GTATTTCTGTTATCTGATTCTCTTATTCTGCTCCTTTGTCCAATCTCACT
TAATGATTACTGTTTCGTGTCCTTTTCCGGTCGTATTATTTACCACCTCT
TTTTTTTTTTTCTATCTGTCTTTTTTCTTATTCCTTCTTCCGTTTCTATA
CCTTCCCCGTATTATTTCTTTATACTCTCTCCTATTTTCCTTTTCTTTTC
CTCACTTTTTCTCTCATATTATTCCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_n13.b1 MSMg01no185_n13.b1 CHROMAT_FILE:
MSMg01no185_n13.b1 PHD_FILE: MSMg01no185_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:39 2005
         (236 letters)



>mm_chr9_14913978_14914613
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttttagctcaatagaagtgagttcctggctttggaagcagctggcacaggtgatgtcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gttttagctcaatagaagtgagttcctggctttggaagcagctggcacaggtgatgtcac 377

                                                                       
Query: 61  attgatgatagcagggtttcaaggctttactttttacagagggtcatctatgagaagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 attgatgatagcagggtttcaaggctttactttttacagagggtcatctatgagaagagc 317

                                                                       
Query: 121 tatggctatctcttgaaaggggaatgcagattaatccatggtgcttactgaagggaacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tatggctatctcttgaaaggggaatgcagattaatccatggtgcttactgaagggaacca 257

                                                                   
Query: 181 tggtaggtgactcatggatagttactaaggagtatctttgtagttgatagatttga 236
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tggtaggtgactcagggatagttactaaggagtatctttgtagttgatagatttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no185_n13.g1 MSMg01no185_n13.g1 CHROMAT_FILE:
MSMg01no185_n13.g1 PHD_FILE: MSMg01no185_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:40 2005
         (289 letters)



>mm_chr9_14750022_14750710
          Length = 689

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatctaggagataaaattggcaaagccaggtaggttggggcagggtgtatacatagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatctaggagataaaattggcaaagccaggtaggttggggcagggtgtatacatagcg 260

                                                                       
Query: 61  tccatcccaacaccgacacttgtcttaaaataatgagccccacagatggaaaacgtgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccatcccaacaccgacacttgtcttaaaataatgagccccacagatggaaaacgtgcta 320

                                                                       
Query: 121 cactgctgtgagcagtattgtgctacaaacaaaactcactccagggagaaattgatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgctgtgagcagtattgtgctacaaacaaaactcactccagggagaaattgatattt 380

                                                                       
Query: 181 aggaaacgtgtttcattcctgtgaattcacctgaggtcaaattaattgtgtggcatgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaacgtgtttcattcctgtgaattcacctgaggtcaaattaattgtgtggcatgtgt 440

                                                         
Query: 241 ttcccagtggttaagagagcccagcatactttgattaaccaaatga 286
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccagtgggtaagagagcccagcatactttgattaaccaaatga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)