Query= MSMg01no185_p22.b1 MSMg01no185_p22.b1 CHROMAT_FILE:
MSMg01no185_p22.b1 PHD_FILE: MSMg01no185_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:51 2005
(318 letters)
>mm_chr9_124017967_124018684
Length = 718
Score = 609 bits (315), Expect = e-179
Identities = 315/315 (100%)
Strand = Plus / Minus
Query: 4 ggaattctacccctacattcttttcaaattcatccttgttgccttctatgggctgctagt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattctacccctacattcttttcaaattcatccttgttgccttctatgggctgctagt 459
Query: 64 ttcttgtctcatctgctatccacttcatattgatctctccttcactcatagctcatccct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttcttgtctcatctgctatccacttcatattgatctctccttcactcatagctcatccct 399
Query: 124 ctcattctgtctgccccaacagttaacagtgcatatgtactcctcatcctgaaaccccca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctcattctgtctgccccaacagttaacagtgcatatgtactcctcatcctgaaaccccca 339
Query: 184 atagccacatgacttggatgtggtgggacttcacagtggttgacctgctctcacattccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atagccacatgacttggatgtggtgggacttcacagtggttgacctgctctcacattccc 279
Query: 244 agtcctgtgcacacccacaactgtcttctctccatttcctccaaactcaccacttccttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agtcctgtgcacacccacaactgtcttctctccatttcctccaaactcaccacttccttt 219
Query: 304 atgccttagtgattt 318
|||||||||||||||
Sbjct: 218 atgccttagtgattt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no185_p22.g1 MSMg01no185_p22.g1 CHROMAT_FILE:
MSMg01no185_p22.g1 PHD_FILE: MSMg01no185_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:51 2005
(561 letters)
>mm_chr9_123877744_123878708
Length = 965
Score = 996 bits (515), Expect = 0.0
Identities = 551/565 (97%), Gaps = 4/565 (0%)
Strand = Plus / Plus
Query: 1 agtaaaagtagtggctttgtttttaaattaataaccacagatcctatctctcattgggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agtaaaagtagtggctttgtttttaaattaataaccacagatcctatctcttattgggcc 260
Query: 61 catgccactcattgtcacctttattccagtttctggaatgccccattttgtttattcatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgccactcattgtcacctttattccagtttctggaatgccccattttgtttattcatc 320
Query: 121 tcctttctaacagagagaagttcaaggaaacaattaaagaggtgacttatacctaagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctttctaacagagagaagttcaaggaaacaattaaagaggtgacttatacctaagcta 380
Query: 181 cctctaagtttcctttgaccctacaagattgggaatcctgactgtaagaactgtcagtat 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctaagtttcctttgaccctaaaagattgggaatcctgactgtaagaactgtcagtat 440
Query: 241 ccgtcttggagagctatatactgtctcctcattctcttcttagacctt----ggttgaca 296
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cagtcttggagagctatatactgtctcctcattctcttcttagaccttccttggttgaca 500
Query: 297 cctacggtctgaatcagaagccagcagagagctcatgttctcctgtggacgcagatatag 356
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 501 cctatggtctgaatcagaagccagcagagagctcatgttctcctgtggatggagatatag 560
Query: 357 aactggtcctttctagttggtccacagagaggaagggcagccattttgccagtggtatag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactggtcctttctagttggtccacagagaggaagggcagccattttgccagtggtatag 620
Query: 417 ccacatgcctttgaaacagctgccgaaggtacttccagaaccgttcacccacaaaaacat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacatgcctttgaaacagctgccgaaggtacttccagaaccgttcacccacaaaaacat 680
Query: 477 aaatgattgggttgacacagcagtgggtgtaggtaatcacctcagtcacctgcatggcca 536
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 aaatgattgggttgacacaacagtgggtgtaggcaatcacctcagtcacctgcatggcca 740
Query: 537 ggtccagatgtttactctgctcaca 561
||||||| || ||||||||||||||
Sbjct: 741 ggtccagttgcttactctgctcaca 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 965
Length adjustment: 10
Effective length of query: 551
Effective length of database: 955
Effective search space: 526205
Effective search space used: 526205
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
