BAC Information

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BAC

Clone NameMSMg01-186C13
Chromosome9 (Build37)
Map Location 84,379,401 - 84,467,509
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb, EG666669
Downstream geneLOC666672, BC023892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186C13.T7 (MSMg01no186_c13.b1)MSMg01-186C13.TJ (MSMg01no186_c13.g1)
ACCAG377930AG377931
length731766
length of high quality
(start - end)		501 (45 - 545)296 (78 - 373)
definitionCHROMAT_FILE: MSMg01no186_c13.b1 PHD_FILE: MSMg01no186_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:04 2005CHROMAT_FILE: MSMg01no186_c13.g1 PHD_FILE: MSMg01no186_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,379,401 - 84,379,897)(84,467,223 - 84,467,509)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAAGGTAGATTGTGAAGCAGGGAACTGGAGGACCTATTGTCTTGC
GATGGACTAGAGAGTACTGTTCTGCTCTTTACATCTTCATGAACCTAGAG
ACAGAAGTCAAGGCATGTGATGATGGTTGAGTCTGGAAGTATAAACCGTT
TCTCTGAACTTCACCCCAGCGGGCACCTTGAATCCTTCAGGACTATATCT
CTGCCTGTTTCTGACAGGTAGTACCAGGAATGCCAGGCAGGAGGAATGGA
CTTGATTTTGACGTTCAGTATTAGGAGCTCCATTCATCCTGGGGAATACC
AGCCGCTCTCTAATACACACTTTGTGATTGTGATGCATTGACTCCCATGT
GATTTTCTATATTGCCCCACTTCCTAATCACTCAGTTTCAATAAAAGTGC
AATATATTTGGTCTCCTTGTAGCTGTACCAAATAATTCTAGTAATGTTCA
TTTTGTGGGATGTATCTCAGATGCTATGGCTTCAGCCTTTAATTGTATAC
CAAAAGGAATAGGGGCAAAGCTAATAATGCCAGGAAGGTTGAAATATGAT
TAGGAATTTTGGTCTTGTCAATATAAATTCCAAAGCAAAACAATTTTATC
AATCTTTATATATGATTTCCCCATTTCATATCCTTATATCTTTTTTTCAC
TAATTATTCACCAATTATGTTCTCTATTTTT

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTCCTTCCAGGAAAATAAAT
AAATGAATGAATAAAGAAGTCCATTTGCTAGGTTTAAAAGGAATGTGCTT
CAGGGTAATGATTTTTTTATATATAATAAATCAGGAGCTAATAAGAAAGA
ACTTAAAGACTCCTATATTTGATCTGAAGGAAAGCAAGGACTCTCACCTC
CATTGCTTCCTTTAACATAGACCTATCAGGCTGTAGGAGAATTGAATAGG
CATTTAAAAGTGTTGGCCACTGAAAGATTTGGTTTTGGATGATATGAAGC
AGGAAAAAAAATGTTTTTTTTTTCCCGCCCCCCCGCAAANAATGAGNGTA
TGAAATTTTTAGACTATTCCCCCCAACAGAAAAAAAACATCTTGTGTGTG
GTAACCCTTTCACTCATCTAACATTCAAGATTATGCACTCACTGATCAAT
GCACTCTACCTTCATATATTCATACTCCTTTCTTTATATTGGTCTATCTA
ATTTCCATGTTCCGTTCCTTCATTACACCCCCTTTTTCAAATCACTCTCG
TTTTTTTTTGCTCACCTATATATCTATATTCCTTTTCTTATTTCTCATGG
TGATGGTTGACGGTTTATCCCTTTTTTTGCTTCCTTTATATTCTCCTTTT
TTCACACTTCTTTTTTCCTTTCCCTCCACATTCATTTCTCTTCATACCCA
CTCACCCCCTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_c13.b1 MSMg01no186_c13.b1 CHROMAT_FILE:
MSMg01no186_c13.b1 PHD_FILE: MSMg01no186_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:04 2005
         (501 letters)



>mm_chr9_84379197_84380097
          Length = 901

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaggtagattgtgaagcagggaactggaggacctattgtcttgcgatggact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaggtagattgtgaagcagggaactggaggacctattgtcttgcgatggact 264

                                                                       
Query: 65  agagagtactgttctgctctttacatcttcatgaacctagagacagaagtcaaggcatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagagtactgttctgctctttacatcttcatgaacctagagacagaagtcaaggcatgt 324

                                                                       
Query: 125 gatgatggttgagtctggaagtataaaccgtttctctgaacttcaccccagcgggcacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatgatggttgagtctggaagtataaaccgtttctctgaacttcaccccagcgggcacct 384

                                                                       
Query: 185 tgaatccttcaggactatatctctgcctgtttctgacaggtagtaccaggaatgccaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaatccttcaggactatatctctgcctgtttctgacaggtagtaccaggaatgccaggc 444

                                                                       
Query: 245 aggaggaatggacttgattttgacgttcagtattaggagctccattcatcctggggaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaggaatggacttgattttgacgttcagtattaggagctccattcatcctggggaata 504

                                                                       
Query: 305 ccagccgctctctaatacacactttgtgattgtgatgcattgactcccatgtgattttct 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagccgctctctaagacacactttgtgattgtgatgcattgactcccatgtgattttct 564

                                                                       
Query: 365 atattgccccacttcctaatcactcagtttcaataaaagtgcaatatatttggtctcctt 424
           ||||||  | |||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 565 atattgttctacttcctaatcactcagtttcaataggagtgcaatatatttggtctcctt 624

                                                                       
Query: 425 gtagctgtaccaaataattctagtaatgttcattttgtgggatgtatctcagatgctatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtagctgtaccaaataattctagtaatgttcattttgtgggatgtatctcagatgctatg 684

                            
Query: 485 gcttcagcctttaattg 501
           |||||||||||||||||
Sbjct: 685 gcttcagcctttaattg 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_c13.g1 MSMg01no186_c13.g1 CHROMAT_FILE:
MSMg01no186_c13.g1 PHD_FILE: MSMg01no186_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:04 2005
         (296 letters)



>mm_chr9_84466919_84467614
          Length = 696

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtccttccaggaaaataaataaatgaatgaataaagaagtccatttgctaggtttaa 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 591 caagtccttccaggaaaataaataaatgaatcaataaagaagtccatttggtaggtttaa 532

                                                                       
Query: 61  aaggaatgtgcttcagggtaatgatttttttatatataataaatcaggagctaataagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaggaatgtgcttcagggtaatgatttttttatatataataaatcaggagctaataagaa 472

                                                                       
Query: 121 agaacttaaagactcctatatttgatctgaaggaaagcaaggactctcacctccattgct 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaacttaaagactcctatatttgatctgaaggaaagcaaggactctcacctccattgct 412

                                                                       
Query: 181 tcctttaacatagacctatcaggctgtaggagaattgaataggcatttaaaagtgttggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcctttaacatagacctatcaggctgtaggagaattgaataggcatttaaaagtgttggc 352

                                                          
Query: 241 cactgaaagatttggttttggatgatatgaagcaggaaaaaaaatgt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cactgaaagatttggttttggatgatatgaagcaggaaaaaaaatgt 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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