BAC Information

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BAC

Clone NameMSMg01-186E14
Chromosome9 (Build37)
Map Location 47,376,569 - 47,531,425
singlet/doubletdoublet
Overlap geneCadm1
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186E14.T7 (MSMg01no186_e14.b1)MSMg01-186E14.TJ (MSMg01no186_e14.g1)
ACCAG378015AG378016
length779727
length of high quality
(start - end)		316 (45 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no186_e14.b1 PHD_FILE: MSMg01no186_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:14 2005CHROMAT_FILE: MSMg01no186_e14.g1 PHD_FILE: MSMg01no186_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,531,114 - 47,531,425)(47,376,569 - 47,376,854)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTCAAAGTGAAAAGGAAAATAAAAGAGACGATGAAGGGGGAAAGG
CATGGTGAAATTTCAGTGCTTGGAGAAAGTTTGTTCTTTAAGCGTTGGGT
TCTTAGCAAGATGGATGGGCTGCTCCTGTTGGGAGAAGTCGTTTTTCAAC
CAGTCCTTTTTTTTTTAATTATTTGTCTTTTTATCAATTATGAAACACAA
ATCGGCAGTAGGTTGGCTGGGCGGTTGTCTGGCGAAAAGATCTCTGCACA
CAGGTCTCTTCACGGCCCCTTCTGCTTATGTACCACTGTTACCAGCCAGC
TCTCGGCTCTTTTGTTTTCTGCCTCCCCCCCCCCCGCTAGACCAGTGATA
GTAAACTGTCCAGCCCCCCCTTTTTGAAAAACAAAAGACCAGATCTTGCT
GAGCAGCATCTATTGGATCATTGATGCAAGATTTCTATTCTTTGATCCTT
GTACTGTTTCACTAAATTGAGCCATCATTTAACCTGTCCGATCTTTTTTT
GATCTTTATTATTTTTTGTTTCCGATAATTGCTTTTCTTACAGAAAATGT
TTTTTTTCTTATCTATCGTTAATATTGTTATAGTTGTTTTTTATTTATTA
TTATTTTTTAAATATTCACAACACTCCGTAGCTTCTTTATCTGTTCCTCT
TTCGTTTTTTCGCATTAATAGTACAATATATTCGTATTAATTGACTTTTA
CTACAATACATTTCTTTCTGATAAATCAA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACTGTGGGAGTCTCACCATCCAC
TAAAGACTGGATACATGGAAATCATATTTTTTTGCCCGCTCTGTACTGGA
AGCTAATAAATTATGTAGTACCCATTCCAGCAGAAGCCTGCTCTAGAATT
AAAGCTAATGTGCTCCTTGAAACACCAAAGAAAACATAGGCAAATGCATC
ACAGGTTCCCCGGCTGACGCTTAGACCACTGCGTTAGTTACCTTTTGCTT
TTAATTCCTTTGAAATGGTATGCAAGCTATTTGATCAAAATTGACCCCCT
GACACAATCTTATTTTGAATTATGCACCACCAACTATAGCAGTGAGGAGG
GAAGCCTCTGGTACAACACCCCACACGATTCCAATGCCACTCTTGCCCAG
GCCAAGTGTGTGGCTCTTATACAGCTCAGCCAGTCTGAGCTCAAGTGTTG
TTTGTTTGCTTGTATAGCATAAACTATTTTTATATTAATTTCCACTTATT
AAACCTATATATTACTATTTTATATCAATATCATTTTTCCAATAATATAT
CTTTTCACCTTCACTTATCACTACTTTAAAAATAATCTTCTATTTATTTT
TATCCTTTCTTTTTTTTTCTATTTTCTAACCAAATCTTTCTATTTCCTTT
CCTCTACATCTTCTCATCATTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_e14.b1 MSMg01no186_e14.b1 CHROMAT_FILE:
MSMg01no186_e14.b1 PHD_FILE: MSMg01no186_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:14 2005
         (316 letters)



>mm_chr9_47530910_47531625
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtcaaagtgaaaaggaaaataaaagagacgatgaagggggaaaggcatggtga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctgtcaaagtgaaaaggaaaataaaagagacgatgaagggggaaaggcatggtga 457

                                                                       
Query: 65  aatttcagtgcttggagaaagtttgttctttaagcgttgggttcttagcaagatggatgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aatttcagtgcttggagaaagtttgttctttaagcgttgggttcttagcaagatggatgg 397

                                                                       
Query: 125 gctgctcctgttgggagaagtcgtttttcaaccagtccttttttttttaattatttgtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gctgctcctgttgggagaagtcgtttttcaaccagtccttttttttttaattatttgtct 337

                                                                       
Query: 185 ttttatcaattatgaaacacaaatcggcagtaggttggctgggcggttgtctggcgaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttttatcaattatgaaacacaaatcggcagtaggttggctgggcggttgtctggcgaaaa 277

                                                                       
Query: 245 gatctctgcacacaggtctcttcacggccccttctgcttatgtaccactgttaccagcca 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 276 gatctctgcacacaggtctcttcacggccccttctgcatatgtaccactgttaccagcca 217

                       
Query: 305 gctctcggctct 316
           ||||||||||||
Sbjct: 216 gctctcggctct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_e14.g1 MSMg01no186_e14.g1 CHROMAT_FILE:
MSMg01no186_e14.g1 PHD_FILE: MSMg01no186_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:14 2005
         (287 letters)



>mm_chr9_47376369_47377055
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgtgggagtctcaccatccactaaagactggatacatggaaatcatatttttttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactgtgggagtctcaccatccactaaagactggatacatggaaatcatatttttttgcc 260

                                                                       
Query: 61  cgctctgtactggaagctaataaattatgtagtacccattccagcagaagcctgctctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgctctgtactggaagctaataaattatgtagtacccattccagcagaagcctgctctag 320

                                                                       
Query: 121 aattaaagctaatgtgctccttgaaacaccaaagaaaacataggcaaatgcatcacaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaaagctaatgtgctccttgaaacaccaaagaaaacataggcaaatgcatcacaggt 380

                                                                       
Query: 181 tccccggctgacgcttagaccactgcgttagttaccttttgcttttaattcctttgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccggctgacgcttagaccactgcgttagttaccttttgcttttaattcctttgaaat 440

                                                         
Query: 241 ggtatgcaagctatttgatcaaaattgaccccctgacacaatctta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtatgcaagctatttgatcaaaattgaccccctgacacaatctta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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