BAC Information

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BAC

Clone NameMSMg01-186H07
Chromosome9 (Build37)
Map Location 36,143,030 - 36,245,749
singlet/doubletdoublet
Overlap geneEG639025
Upstream geneCdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485
Downstream geneLOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186H07.T7 (MSMg01no186_h07.b1)MSMg01-186H07.TJ (MSMg01no186_h07.g1)
ACCAG378136AG378137
length725713
length of high quality
(start - end)		372 (45 - 416)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no186_h07.b1 PHD_FILE: MSMg01no186_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:26 2005CHROMAT_FILE: MSMg01no186_h07.g1 PHD_FILE: MSMg01no186_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:26 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(36,245,384 - 36,245,749)(36,143,030 - 36,143,313)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTATTCAGTAGCCTCCATCTTCCAAATGCTAGGCTTACCACTGTG
AACCTTTAACATTTCAACCACATCATCTTCCCTATGTTGGTGTCACTTCT
ACTAAACTGTATAAAAATACCCCAGTGTACCCTTTAAAAACCAACAACCA
AAAAACAAAACAACAAAATCATTGAACTCTATAACAGAGAAACTATAATG
TCAAAGTTTGCCAGGGGCTGGGAGTGAGGGCATGTTTTCATGACAGCAAA
GGTCCACGGGAATTCTGGAGGTAATGGAAATCTCTGAACCTTATTTTTGA
TGGTTGGGGGAAGATATATTTGCTAAGTTGCAGTATTTGTTTAAAAAAAA
AACCAAAAGGTCACCGCCCCCAAACAATACACACATTAACTGATTTTATT
TTTATTATAGTGTGTGTGTCCTACACTGCAATGATCATTATGTGTAGGCC
ACATATAAATCTTTTTATATCTAGTCTCATAGTCTTTAAACTGCCTTCCA
GTATCGTAAATCAGTTCCTTATGCTTTTATACCCTTAAACTTCTTTAACT
ATTCTCTCACTTTAACCCCTCTAATCTTTTGATTCTTCTTAATTTTATCC
TATTTATTCTTTTTTTTTCTCTTAATACTAAAATTTCTCATTTTATACTT
CATGTAAATTATTATATCTCACACN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGACATAATTGTGGGCTAGAAA
TAACTGAACTATTTTTGTTGATAATAACGAAGGGATATTAGAGACAAATG
GATTTTCACCAAGATAAGAAGGGTGCGTACCTTTCAGCTCTTCATTTACA
GACTAGGCTCAGGTTCTGAGGGTTGGAGAACTACATGGTTTCTACTCTGG
GATACTCACAACAATAATGAGTGAGAGACAATTGAAAGACTTTCTCTTCC
AAATAAAGATGTGTTTCTCTCTGCCACACAAAGTCTACAGTTTCTAGTAG
ATCACACTGAATTGAGAAAACTCTCTGAAACTGACTGGGCCCTAGAATAT
ACATGCCATTGTTGCACCCAACTCCCATATCGATTTTAGGGCTCCTTTAA
TGGTACTCACATGTGCAGCAAATAAGACTGAATGCAATCCATTGCCCCAG
ATGCTTCAAGCTAAGAGCACCAAGCTCAAGTCTCCAGGAAAACACTTTAT
TCTAGCCCAGAAAGATATCATGGGTTTCTGAAGATTAAACACATTGATGG
AATGCCTCATTCCCAGTGTTATATAGTTTCATTGTGGAACTCCAATATTT
TTCTTAGTATCAGAATTTAAAGGATATTTATAATTATATGGAAACTTGTT
TAATAAGCACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_h07.b1 MSMg01no186_h07.b1 CHROMAT_FILE:
MSMg01no186_h07.b1 PHD_FILE: MSMg01no186_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:26 2005
         (372 letters)



>mm_chr9_36245344_36246115
          Length = 772

 Score =  708 bits (366), Expect = 0.0
 Identities = 366/366 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttattcagtagcctccatcttccaaatgctaggcttaccactgtgaaccttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaattccttattcagtagcctccatcttccaaatgctaggcttaccactgtgaaccttta 347

                                                                       
Query: 65  acatttcaaccacatcatcttccctatgttggtgtcacttctactaaactgtataaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acatttcaaccacatcatcttccctatgttggtgtcacttctactaaactgtataaaaat 287

                                                                       
Query: 125 accccagtgtaccctttaaaaaccaacaaccaaaaaacaaaacaacaaaatcattgaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 accccagtgtaccctttaaaaaccaacaaccaaaaaacaaaacaacaaaatcattgaact 227

                                                                       
Query: 185 ctataacagagaaactataatgtcaaagtttgccaggggctgggagtgagggcatgtttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ctataacagagaaactataatgtcaaagtttgccaggggctgggagtgagggcatgtttt 167

                                                                       
Query: 245 catgacagcaaaggtccacgggaattctggaggtaatggaaatctctgaaccttattttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 catgacagcaaaggtccacgggaattctggaggtaatggaaatctctgaaccttattttt 107

                                                                       
Query: 305 gatggttgggggaagatatatttgctaagttgcagtatttgtttaaaaaaaaaaccaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gatggttgggggaagatatatttgctaagttgcagtatttgtttaaaaaaaaaaccaaaa 47

                 
Query: 365 ggtcac 370
           ||||||
Sbjct: 46  ggtcac 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no186_h07.g1 MSMg01no186_h07.g1 CHROMAT_FILE:
MSMg01no186_h07.g1 PHD_FILE: MSMg01no186_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:26 2005
         (289 letters)



>mm_chr9_36142830_36143518
          Length = 689

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgacataattgtgggctagaaataactgaactatttttgttgataataacgaagggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgacataattgtgggctagaaataactgaactatttttgttgataataacgaagggat 260

                                                                       
Query: 61  attagagacaaatggattttcaccaagataagaagggtgcgtacctttcagctcttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagagacaaatggattttcaccaagataagaagggtgcgtacctttcagctcttcatt 320

                                                                       
Query: 121 tacagactaggctcaggttctgagggttggagaactacatggtttctactctgggatact 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagactagggtcaggttctgagggttggagaactacatggtttctactctgggatact 380

                                                                       
Query: 181 cacaacaataatgagtgagagacaattgaaagactttctcttccaaataaagatgtgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaacaataatgagtgagagacaattgaaagactttctcttccaaataaagatgtgttt 440

                                                       
Query: 241 ctctctgccacacaaagtctacagtttctagtagatcacactga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctctgccacacaaagtctacagtttctagtagatcacactga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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