BAC Information

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BAC

Clone NameMSMg01-187H19
Chromosome9 (Build37)
Map Location 33,810,687 - 33,810,997
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187H19.T7 (MSMg01no187_h19.b1)MSMg01-187H19.TJ (MSMg01no187_h19.g1)
ACCAG378818AG378819
length777737
length of high quality
(start - end)
316 (45 - 360)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no187_h19.b1 PHD_FILE: MSMg01no187_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:49 2005CHROMAT_FILE: MSMg01no187_h19.g1 PHD_FILE: MSMg01no187_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTACTTTTAGCCAAAACCAGACAAACCAGAAAGGAAATAGCCCAA
GGACGCTGAAGTGGGCAACACAAATCCCTGTGCACTGGCTCTGGTTAAAG
GTTGACAGCAGGGAAGATTGACATTCTTGATTTATAAGCAGGGAGAGTGC
CAGGTTCCCATAGAAATGGGCCCTGGCCTCAAATTAAAACAGTTATTTAT
AAGGATGAAAGGGGAATTGAATCTCCAAACTACCACTGTAGCCCCTGGCC
TCTCTCCTGAAGTTTCAAGTTTTGGGGGGGAGTTGTTTGCTGAGTCAACA
TATACAGTATTTTTTATTTTTCCCCCCCCCCCCCAGNNATATTGCTGTTG
AACACACATGATTCCCCCCCCCCCTTTAAATTAAAAGAACTGGCACCTAC
GACAGTTCTGATCGCATATATGGCCATGCGATCACTAAATTCCTGATCCT
GACCGACTTTTCCCCGTTTTTAGCAGCTTTCTTCCCCCATGTTCCTTCTT
TTTCCTCTCTTAATAAAAAATATTCTTCTTTTTTTTATTCCCACTTTCCC
TCCTTTTCTCCCTTTCCCTCCCCTTACTTTTTTCCCCCCACACCTTTCTT
TTCCTTTCCCCCTTTCCTCTCCCCACCCCTTATTCCCCCTTCCCCTTCCC
CCCACCCTTTTATCCTTCCCTTTCCCTTCCCCCCTTTTTCCCCATTATTA
TGTCTCTCTTTTACCTCTTTCTCCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGCTAAAACCATCTGACTCTCA
GCTTTTTTTTAAATTTTTTTTAATCCGGTATTTTCTTCATTTACATTTCC
AATGCTATCCCAAAAGTCCCCCATACCCCCCCCCCCCGCAACTCCCCTAC
CTACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAAGCATCT
AAAGTTTGCAAGACCAATGGGACTCTCTTTCCAATGATGGCCAACTAGGC
CATCTTCTGATGATATGCAGTTTTTTTTTGAGCTCTGGGGGGNAGCTTTT
AATGATTGGNNATGNTTANTGCGGTTACCGGTTTAATTTAAAACTGATAG
AGTAGAGGCCCCCAAAAACTGTATNGTAATCTGGATTGCCGTAGGGGCTT
TTGTCATCTCCCATTTTTTTTTTCTGATTTTATTAATTTGAATATTCCCA
CTGTCTTTTAGTTAGTCTGGAGAAGATTTTGTCTATCTTGCTGATTTTCT
CATATAACACGTTTTTGTTTTTTTGATTGTTTTGCACCGCCCCATCTTGC
CAACATTTCAAATGCCCTTATAGCCTATTTTATCCATTAATTGGCACTAA
TAAGCCATCTTTTTTTTTTTTCCTTCCCCTTTGTTTATTAAATGTTTAAT
GTTTGGGTTATTAACCTTTTACACTCTTTCACCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_h19.b1 MSMg01no187_h19.b1 CHROMAT_FILE:
MSMg01no187_h19.b1 PHD_FILE: MSMg01no187_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:49 2005
         (316 letters)



>mm_chr9_33810483_33811198
          Length = 716

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactacttttagccaaaaccagacaaaccagaaaggaaatagcccaaggacgctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactacttttagccaaaaccagacaaaccagaaaggaaatagcccaaggacgctg 264

                                                                       
Query: 65  aagtgggcaacacaaatccctgtgcactggctctggttaaaggttgacagcagggaagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtgggcaacacaaatccctgtgcactggctctggttaaaggttgacagcagggaagat 324

                                                                       
Query: 125 tgacattcttgatttataagcagggagagtgccaggttcccatagaaatgggccctggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgacattcttgatttataagcagggagagtgccaggttcccatagaaatgggccctggcc 384

                                                                       
Query: 185 tcaaattaaaacagttatttataaggatgaaaggggaattgaatctccaaactaccactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaattaaaacagttatttataaggatgaaaggggaattgaatctccaaactaccactg 444

                                                                       
Query: 245 tagcccctggcctctctcctgaagtttcaagttttgggggggagttgtttgctgagtcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcccctggcctctctcctgaagtttcaagttttgggggggagttgtttgctgagtcaa 504

                      
Query: 305 catatacagta 315
           |||||||||||
Sbjct: 505 catatacagta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)