BAC Information

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BAC

Clone NameMSMg01-187N17
Chromosome9 (Build37)
Map Location 76,399,151 - 76,399,452
singlet/doubletsinglet
Overlap genenone
Upstream geneTmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187N17.T7 (MSMg01no187_n17.b1)MSMg01-187N17.TJ (MSMg01no187_n17.g1)
ACCAG379062AG379063
length734742
length of high quality
(start - end)
313 (45 - 357)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no187_n17.b1 PHD_FILE: MSMg01no187_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:18 2005CHROMAT_FILE: MSMg01no187_n17.g1 PHD_FILE: MSMg01no187_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCCGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACAGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATG
AGGTCCCATTTATTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTT
TCTCCTATATTTTTTTCACCCCCCCCGCCTTTATGTGGAGTTCCTTAATA
CACTTAGATGGGCCCCCCCCACAAAAATATATAAATGGATCGGTTGGCAT
TTTTCTACATGATAACAGTCAGTTGTGCCAGCTCCATTCGTTGAAAATGC
TGCTTTTTTTCCACTGTACGGTTTTACTTCCCTATCTTCATACTTTTTGA
CCCCTTGTGTGAGGGTTCCTCCTTTTTTTCTTCCCCTCCGCCCCCTTTCC
CCTTTCCCCCCGTTTCTTTCCACCCCCCTTATCTTTTCTTACCCTTTTCC
TTAACCCCCTTTTTTCTCCCCCTTTCCCACCTTTTTAACTTTTCATTTAA
CCCTTTGCCTTTTTCTATATATTCCATATTTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGGACACATGGACAGAAAGGG
AAGACATGGCAGCCACGTGTGTACTTCCATCGTACAGCTGTGAGATGCTG
TCATCCACATGAACATCTACGAACTTTAAAACCTCCATGGAAAAGCAAGC
TTAGGAAGAATACGTAAAGTATGGACTCAGAGCTAGACGAGAGGACCTAG
GAAAACACTGTCCAGCTAACAAGGAAGACCAGACTGTGTGAGAGTGTAGA
AGGAAGCTCAGCTTGTTCCAGCCACCCTTTGTCGCTACCATGGAGGTGAA
TTCAAGTTAGGTGCTGTCCCTGCACCCGCCCCGCCATGAACACACATGAT
TTTTAATCTGGAATGCACCGCCCTATCTTTTGTATGTAAGTAGATTTGAA
ACTAATGAGAAACTTCATCTCTATCCCTGCAAGGCAGTTCTAAAATGTAG
AACTGTCTATATGGACTAAAATGTTGGTTAAAATCATACATTCAAACTAT
TGACTAAATTCTAGCCATAAACCATCCAATCTCAAGATAATTTAGCTTTA
TTTAGAATCATTTATGCTAAAGTTCACTTACTATCACTACATATAACTAT
TAATACGTGTAAATTGATCAGTATTTATGCCTCTGCCACTTAATACCAAT
GTATTTTTGAGTATTTTTGAAAACTTTAATATTATCGACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_n17.g1 MSMg01no187_n17.g1 CHROMAT_FILE:
MSMg01no187_n17.g1 PHD_FILE: MSMg01no187_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:18 2005
         (288 letters)



>mm_chr9_76398965_76399652
          Length = 688

 Score =  431 bits (223), Expect = e-125
 Identities = 276/303 (91%), Gaps = 16/303 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagggacacatggacagaaagggaagacatggcagccacgtgtgtacttccatcgtaca 60
           ||||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct: 187 ctagggacacacggacagaaagggaaga-acggcagccacgtgtgtacttccatcataca 245

                                                                       
Query: 61  gctgtgagatgctgtcatccacatgaacatctacgaac---------------tttaaaa 105
           ||| ||||||||||||||||||||||| ||||||||||               |||||||
Sbjct: 246 gctctgagatgctgtcatccacatgaagatctacgaactgtaaaataaaacagtttaaaa 305

                                                                       
Query: 106 cctccatggaaaagcaagcttaggaagaatacgtaaagtatggactcagagctagacgag 165
           |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 306 cctccatggaaaagcaagtttaggaagaatatgtaaagtatggactcagagctagacgag 365

                                                                       
Query: 166 aggacctaggaaaacactgtccagctaacaaggaagaccagactgtgtgagagtgtagaa 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 366 aggacctaggaaaacactgtccagctaacaaggaagaccagactgtgtgagagtgcagaa 425

                                                                       
Query: 226 ggaagctcagcttgttccagccaccctttgtcgctaccatggaggtgaattcaagttagg 285
           |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct: 426 ggaagctcagcttgttccagccacccttcgttgctaccatagaggtgaattcaagttagg 485

              
Query: 286 tgc 288
           |||
Sbjct: 486 tgc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)