BAC Information

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BAC

Clone NameMSMg01-188B18
Chromosome9 (Build37)
Map Location 40,676,019 - 40,808,242
singlet/doubletdoublet
Overlap geneBsx, 4931429I11Rik, Crtam
Upstream geneOlfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8
Downstream gene2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188B18.T7 (MSMg01no188_b18.b1)MSMg01-188B18.TJ (MSMg01no188_b18.g1)
ACCAG379234AG379235
length750736
length of high quality
(start - end)		322 (45 - 366)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no188_b18.b1 PHD_FILE: MSMg01no188_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:38 2005CHROMAT_FILE: MSMg01no188_b18.g1 PHD_FILE: MSMg01no188_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,676,019 - 40,676,336)(40,807,949 - 40,808,242)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATGTAGACTAGCCTGGCCTCAAACTCACAGAATTCCACTTGCT
TCTACCTCTGGAGTCCTGAGATGAAAGGTGTACGCCACCACTCCTGCCTA
TGTTTAAAAGTGTTAGTTTTATTGAACAATGCTCTTTCAATATTTTTCCT
TCTGCTCCCCATTTTAGGAGTATATATAATTGTGGTCATTGGAAAACAAA
TTCAATATCATCCATTTAGAGTGGCAAGACTTGTATTTCCTTTCTTCATC
TAGCATCAATAAGAGTTGAAGGAATAAAAATCAACTTGGCTTTATGAGTA
GTGTTTAACAACTAATTATTCTTCCACCACCATCTACCTCCAGGAATGAC
GACTCTCATTTCTATTCCCCACCAACAGAATTATATATATTATATATATA
TAATATAAAATATACAATATACTGGAGATATCTAGATATATATCATACAA
GCCCAATGAAATAAGAAACATCAGCCCTACCATTTGTTTTCAAAGACTTG
TGTAACTTAGGGTTAGAGAGATGACTCAGTGTTAAGAACACAGGCTGTTC
TTGCAGAGGGCCAGAATTCTGATCCCAGCATCCACATGGTATGGCTCACA
ACTGCCCCCTGTAAGTCTAGCCCAGGAGAACCTGATGCCTCTGGCATACA
CTTGTACTCTTAAAATAACACACCCTCTGAACTTATGCATAATTAAATAG


CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGTATCCTCAGAAGCCAGAGAGGACA
TTGGCTTCCTTGGAACTGGACCTACAGGCCACTGTGAGCCACAGTAGGTG
ATGTGAATCAAACTGTCCTCTAGAAGAGCAGCAAATGCCCCTAGCTGCTG
AGCCATCTCTCCAGCACGAGGAAATATTGTAAATGAAGGCAGAAGCATAC
TGTCTTTAAAATTTTGTCATTCTGGAAGAATGATGTAATGGCCCGGCAAG
AAGCAATGGGGGCCTGAACCAAGGCCACACCAATGGTGGGGAAAAAAGGA
GTAGGTTGATTAAATCAGTGCTTGCCCAGAGAGGAAAGGCTAGTGTATCG
TTGGTCAAATGTCTGCCACCCCATGGCTGATGACCACATTAACTAATGTA
AGAAAACAGTGGAGTTGAGCCTGTAGCATATCTGTGTTAGTTATGAGAGC
AGGAGAGACACAGGGGATAGGAGAGATCACAGATTCCAATCAGACATGGA
GAGACACAGGGTACAGAGCAGACCCTGATTCCAACTGGACATGGAGAGAC
ATAGGGTACAGAGCAGACCCTGATTCCAACTGGACATGGATAGACACTGG
TTACTTGACATTACCTGATTCCTACTGGACTTGCTAAGACCCAGGGTACA
GACTCGACCCTTGATCCACCCGTACTTGTACAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_b18.b1 MSMg01no188_b18.b1 CHROMAT_FILE:
MSMg01no188_b18.b1 PHD_FILE: MSMg01no188_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:38 2005
         (322 letters)



>mm_chr9_40675816_40676537
          Length = 722

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactatgtagactagcctggcctcaaactcacagaattccacttgcttctacct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactatgtagactagcctggcctcaaactcacagaattccacttgcttctacct 263

                                                                       
Query: 64  ctggagtcctgagatgaaaggtgtacgccaccactcctgcctatgtttaaaagtgttagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctggagtcctgagatgaaaggtgtacgccaccactcctgcctatgtttaaaagtgttagt 323

                                                                       
Query: 124 tttattgaacaatgctctttcaatatttttccttctgctccccattttaggagtatatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttattgaacaatgctctttcaatatttttccttctgctccccattttaggagtatatat 383

                                                                       
Query: 184 aattgtggtcattggaaaacaaattcaatatcatccatttagagtggcaagacttgtatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aattgtggtcattggaaaacaaattcaatatcatccatttagagtggcaagacttgtatt 443

                                                                       
Query: 244 tcctttcttcatctagcatcaataagagttgaaggaataaaaatcaacttggctttatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctttcttcatctagcatcaataagagttgaaggaataaaaatcaacttggctttatga 503

                             
Query: 304 gtagtgtttaacaactaa 321
           ||||||||||||||||||
Sbjct: 504 gtagtgtttaacaactaa 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no188_b18.g1 MSMg01no188_b18.g1 CHROMAT_FILE:
MSMg01no188_b18.g1 PHD_FILE: MSMg01no188_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:38 2005
         (294 letters)



>mm_chr9_40807606_40808299
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtatcctcagaagccagagaggacattggcttccttggaactggacctacaggccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 637 ctggtatcctcagaagccagagaggacattggcttccttggaactggagttacaggccac 578

                                                                       
Query: 61  tgtgagccacagtaggtgatgtgaatcaaactgtcctctagaagagcagcaaatgcccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgtgagccacagtaggtgatgtgaatcaaactgtcctctagaagagcagcaaatgcccct 518

                                                                       
Query: 121 agctgctgagccatctctccagcacgaggaaatattgtaaatgaaggcagaagcatactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agctgctgagccatctctccagcacgaggaaatattgtaaatgaaggcagaagcatactg 458

                                                                       
Query: 181 tctttaaaattttgtcattctggaagaatgatgtaatggcccggcaagaagcaatggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tctttaaaattttgtcattctggaagaatgatgtaatggcccggcaagaagcaatggggg 398

                                                                 
Query: 241 cctgaaccaaggccacaccaatggtggggaaaaaaggagtaggttgattaaatc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cctgaaccaaggccacaccaatggtggggaaaaaaggagtaggttgattaaatc 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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