Query= MSMg01no188_n17.b1 MSMg01no188_n17.b1 CHROMAT_FILE:
MSMg01no188_n17.b1 PHD_FILE: MSMg01no188_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:38 2005
(276 letters)
>mm_chr9_73961292_73961966
Length = 675
Score = 462 bits (239), Expect = e-135
Identities = 271/299 (90%), Gaps = 28/299 (9%)
Strand = Plus / Plus
Query: 5 gaattcaaggagttttgttacaatgccctgcagagtgtggaaaaattctacctgccgtgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggagttttgttacaatgccctgcagagtgtggaaaaattctacctgccgtgt 264
Query: 65 aggtatcaccactagacagaaataggaatttaattactttagattctgttcattgaagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtatcaccactagacagaaataggaatttaattactttagattctgttcattgaagag 324
Query: 125 aaaaaaaaaatgttctacagggtccacactagccctgtaggtcactgaaagcccagagca 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaaaaaa-tgttctacagggtccacactagccctgtaggtcactgaaagcccagagca 383
Query: 185 gaccaggcctccattcacatcaaagcatggttatctggcaaaaaaaaaaaaa-------- 236
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaccaggcctccattcacatcaaagcatggttatctggcaaaaaaaaaaaaaaaaaaaaa 443
Query: 237 -------------------ttaggtgagaattatttgggggaggggaggggattcattc 276
||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaaaaaaaaaaaaaaaaattaggtgagaattatttgggggaggggaggggattcattc 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 675
Length adjustment: 9
Effective length of query: 267
Effective length of database: 666
Effective search space: 177822
Effective search space used: 177822
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no188_n17.g1 MSMg01no188_n17.g1 CHROMAT_FILE:
MSMg01no188_n17.g1 PHD_FILE: MSMg01no188_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:39 2005
(659 letters)
>mm_chr9_74057603_74058661
Length = 1059
Score = 1236 bits (639), Expect = 0.0
Identities = 654/659 (99%)
Strand = Plus / Minus
Query: 1 cagtctggtgcagaagagtggctgtgtatttatttgacaagtcctaaacctttctggagc 60
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 859 cagtctggtgcagaagagtggctgtgtatttacttgacaagtccaaaacttttctggagc 800
Query: 61 acagatttacccctgaatactccttcatttcagtactgcatgcatcccacccaggcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 acagatttacccctgaatactccttcatttcagtactgcatgcatcccacccaggcagca 740
Query: 121 tcagggagaagaggtcttcattcgaggcaagtcccaaagacacggggccctgcagcttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcagggagaagaggtcttcattcgaggcaagtcccaaagacacggggccctgcagcttta 680
Query: 181 agatactgagatgcctggtgcagaggctgtccaaatctttatccactccccatggcaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agatactgagatgcctggtgcagaggctgtccaaatctttatccactccccatggcaaaa 620
Query: 241 tacaagacagaaacaatttcgccatgtctattgtgaggctggcatccaccttcctgggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tacaagacagaaacaatttcgccatgtctattgtgaggctggcatccaccttcctgggtg 560
Query: 301 gcttaggatgagcctttttggagctcttcattttcttctgtcttttaataccattgttct 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcttaggatgcgcctttttggagctcttcattttcttctgtcttttaataccattgttct 500
Query: 361 cctctgagaacttactggtgctgtccccaaggaccaggctgtccccactgggcttggcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctctgagaacttactggtgctgtccccaaggaccaggctgtccccactgggcttggcct 440
Query: 421 gtgcctctgtctggagagagctacacgatgctttgtttcttcttattgtcagggtcttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgcctctgtctggagagagctacacgatgctttgtttcttcttattgtcagggtcttct 380
Query: 481 tctctactgtgctcttggctctcctcaagatgtcacctccatagaatgagccagaagggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctctactgtgctcttggctctcctcaagatgtcacctccatagaatgagccagaagggt 320
Query: 541 caacatcacttaggggagtgggcagcagtagttcaacgagattttccagatcaaacagga 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 319 caacatcacttaggggagtgggcagcagtagttcaacaagattttccagatcaaacagga 260
Query: 601 gaacatggaaaccaatgtgactccattttgttttcacaggcaggacattgaaaggtctt 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaacatggaaaccaatgtgactccattttgttttcacaggcaggacattgaaaggtctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
