BAC Information

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BAC

Clone NameMSMg01-188O19
Chromosome9 (Build37)
Map Location 22,765,553 - 22,765,831
singlet/doubletsinglet
Overlap genenone
Upstream geneEpor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
Downstream geneBmper, LOC100040866, LOC100040878, LOC100040893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188O19.T7 (MSMg01no188_o19.b1)MSMg01-188O19.TJ (MSMg01no188_o19.g1)
ACCAG379781AG379782
length728714
length of high quality
(start - end)
312 (66 - 377)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no188_o19.b1 PHD_FILE: MSMg01no188_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:44 2005CHROMAT_FILE: MSMg01no188_o19.g1 PHD_FILE: MSMg01no188_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTCTCCCNNNCAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGGAATTCCCTTTATCCTCCTGCATCTTCCAGC
CTTCCTGCAGGAAGCGGGAAGTCCACCTCTTCTATCCAGTCATTGGCTGC
TGGCATCTTTATTCATTGATCAAGAACCAATTGGGGAACAGGACTTTCAG
TGTTCACGTGCAGATTTCTGATCCAAGCATCAGAGCCACCTCCTACAGCT
ATGATTGTCTATCAACTGTTTGATAGGCTAAGCCAGAGCTCAAAGTAAAT
ACTGTAGTATTTCCTGTTGCTGTGATAAAACATCATGGCCAAAATCAACT
TACAGAAGAAAGGGCTTGGTTTATGTATATGTTTCCACCCCCACCGTCCC
TAGCAGGGGAGTCATGGCAACAAGTGGCCAGCAACCCGAGAGAACACAGA
TCTATTCATAGGAAGAAAACAGAGAGCATGGAATAGAAGTGGGATGAGGT
TATAAACCCTGCCCCAAGCCCATCCCCAGTGATGTGTTTCCTCCAATAAG
ACTTCATCTCCTAAAGGTTCTATGTCCTCCAGACACTGCTCGACCAGCTG
TGGACCAAGTGTTCAAATGCAAGAGCATGTGAGGACACTTCTCATTCAAA
CCATCACACACACCCACTGATAGACCCACCGAACAGGAAGTAGTACTGCT
AGCTATATTATAGATTCATGTAAGAGTN
CACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGGAAATGGATTTAGAGTTG
AAATCCACAGCAGGAAGATCTTCCATTTTTCTTACCTAAGTTTTCTGGCT
CTTGGGTAGTGGAAGCAGAAAGGAATGTGTTTAAAGTGTAGGTATTCTGG
CTGCTATCACTGGCTGAGCCACCGAAGGTGATTGTCATGCTTGGGGGTGG
AGTCTCAGCCACACTCACTCAGGACCTTTTATTGGGGTGGTAACAAAAGT
GTTCCTCCTGTAAATGATCACAGAAAGGATGATCTGAATTAATTTGGGGG
AATTTCTTCTCNTATCTCACCCCCCCCATTGCCTCCCACCAGTAACCATA
AACTAGGACCTGCTCAGCAAAAAAAAATATGTTTAACCAGGCTAACCTAA
AAAGTAAAGCTTTAGAGCTAGTCTGCTTACCCTTAACTGACAATTACCAT
CTGCCTTACTATCTTTCTGTTGCATCGTCCCCATTCTATTACCCTCATTG
ATTACCACTGTCCGCATTCATTGTTCTTCCATTTTCTTTACTTCTGTATA
CAATTTCTTTCTCCCCCCTTTCCTTCCATTTTTTTACATCCCCTTCCTTT
CAGTCTTTGCATATATATTCTCCCTTGCGCCCCCCCCCCTCCTCTTCATA
TTCTCCCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_o19.g1 MSMg01no188_o19.g1 CHROMAT_FILE:
MSMg01no188_o19.g1 PHD_FILE: MSMg01no188_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:44 2005
         (279 letters)



>mm_chr9_22765353_22766031
          Length = 679

 Score =  532 bits (275), Expect = e-155
 Identities = 278/279 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttggaaatggatttagagttgaaatccacagcaggaagatcttccatttttcttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttggaaatggatttagagttgaaatccacagcaggaagatcttccatttttcttacc 260

                                                                       
Query: 61  taagttttctggctcttgggtagtggaagcagaaaggaatgtgtttaaagtgtaggtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 taagttttctggctcttgggtagtggaagcagaaaggaatgtgtttaaagtgtaggtatc 320

                                                                       
Query: 121 ctggctgctatcactggctgagccaccgaaggtgattgtcatgcttgggggtggagtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggctgctatcactggctgagccaccgaaggtgattgtcatgcttgggggtggagtctc 380

                                                                       
Query: 181 agccacactcactcaggaccttttattggggtggtaacaaaagtgttcctcctgtaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccacactcactcaggaccttttattggggtggtaacaaaagtgttcctcctgtaaatg 440

                                                  
Query: 241 atcacagaaaggatgatctgaattaatttgggggaattt 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcacagaaaggatgatctgaattaatttgggggaattt 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)