BAC Information

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BAC

Clone NameMSMg01-189D23
Chromosome9 (Build37)
Map Location 39,421,178 - 39,450,762
singlet/doubletdoublet
Overlap geneOlfr148, Olfr960
Upstream geneOlfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984
Downstream geneOlfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189D23.T7 (MSMg01no189_d23.b1)MSMg01-189D23.TJ (MSMg01no189_d23.g1)
ACCAG379997AG379998
length758730
length of high quality
(start - end)
713 (46 - 758)349 (382 - 730)
definitionCHROMAT_FILE: MSMg01no189_d23.b1 PHD_FILE: MSMg01no189_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:11 2005CHROMAT_FILE: MSMg01no189_d23.g1 PHD_FILE: MSMg01no189_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:11 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(39,421,178 - 39,421,886)(39,450,414 - 39,450,762)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCTTCTCGGAATACCCCAGACACAAGGACCGGAGACTTTACTC
TTTGTGGTGTTCTTATTCATATACTTCTTCACCTTGCTCGGAAATTCACT
CATCTTTACAGCAATCATTTCTTCATCTACCCTTCACACACCTATGTATT
TCTTCTTGGGACTTCTATCCGTTTTTGACATGTTGTTCCCATCAGTAACC
TGTCCCAAGATGCTATTTTATCTTTCTGGAAGGAGTCCAGCCATCTCTTA
CAAAGGATGTGCTGCCCAGCTCTTCTTCTATCACCTTCTGGGTTCTACTG
AAGGATGCCTCTATTCTGTGATGGCCTATGATCGTTATGTTGCGATATGT
CACCCACTGAGATACATGCTTATCATGAAGCCTGGAGGGTGTGTGAGCTT
GGTAATAATAGCTTGGTTAGTGGGCTGTCTTCATGCCACCATCTTGACCT
CTTTAACCTTTCAATTAGTCTACTGTGCATCCAACCAAGTGGACTATTTC
TTCTGTGATCTTCCTGCAGTTTTACCCCTGGCTTGTACTGACAGTAAGTT
GGCCCGGAAGGTGGGTTCCATCAATGTTGGCTTTCTGGCTCTGATGCTTC
TCTTCAGTGTTTGTGTCTCTTATGTACACATTGGGGTTGCCATTCTGAGG
ATCCGTTCAGCAGAGGGCAGGCAGAAAGCATTCTCCACCTGCAGTGTCCA
CCTCACTG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGTGAGCAATAGAAATATCTGGAG
ACTCAAGTGATAGACACCTTCAAACACTGAGGCAAAAACTTGGAGATGAT
TCCTTGGCCTGGCTGACAATGGAGTTAGTGATATCTGGGAATTTCATGAT
GAAGGCACTGAGATACCCATCAGAGCAGCTCCTCCTCTTTGATATGGCCA
GCAAAGAGACATTGAACACATCTGTGGTGGTCAAATGAAATTCCTAAAAG
CTATCATTGTGGTCCTAGAAACATTCACGGGGAGTGCAAAGGCTATTCTC
CCCCAAAAGTTTTACTCCAGACGCCGATAAATTAGAGTTGAGATGACAGC
AAAATGAAAGAATTGCCAAAATAAGATGGAAAGACAGAAGTGGCCTTGAA
TTGGGCACAGCAGGTAGAGAATGCTTTCTGCCTGCTCTCTGCTAACAGAT
TTTCAGAATGTCAATCCTAATGTGTGCTTAAGAGACACAAACTTTCAGCA
AACGCTTGCTAGTGTATGCAATGGTGTCATCGTTTGGAGGCTAATTATGG
GATGGATCCCTGGATATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCA
GCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGATTGTTTCCAATT
CTAAGAAGGGGCAAAGTGTCCACACTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_d23.b1 MSMg01no189_d23.b1 CHROMAT_FILE:
MSMg01no189_d23.b1 PHD_FILE: MSMg01no189_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:11 2005
         (713 letters)



>mm_chr9_39420974_39422086
          Length = 1113

 Score = 1324 bits (685), Expect = 0.0
 Identities = 703/709 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcttctcggaataccccagacacaaggaccggagactttactctttgtggtg 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcattcttctcggaataccccagacacaaggactggagactttactctttgtggtg 264

                                                                       
Query: 65  ttcttattcatatacttcttcaccttgctcggaaattcactcatctttacagcaatcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcttattcatatacttcttcaccttgctcggaaattcactcatctttacagcaatcatt 324

                                                                       
Query: 125 tcttcatctacccttcacacacctatgtatttcttcttgggacttctatccgtttttgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcttcatctacccttcacacacctatgtatttcttcttgggacttctatccgtttttgac 384

                                                                       
Query: 185 atgttgttcccatcagtaacctgtcccaagatgctattttatctttctggaaggagtcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 atgttgttcccatcagtaacctgtcccaagatgctattttatctttctgtaaggagtcca 444

                                                                       
Query: 245 gccatctcttacaaaggatgtgctgcccagctcttcttctatcaccttctgggttctact 304
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 445 gccatctcttacaaaggatgtgccgcccagctcttcttttatcaccttctgggttctact 504

                                                                       
Query: 305 gaaggatgcctctattctgtgatggcctatgatcgttatgttgcgatatgtcacccactg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaaggatgcctctattctgtgatggcctatgatcgttatgttgcgatatgtcacccactg 564

                                                                       
Query: 365 agatacatgcttatcatgaagcctggagggtgtgtgagcttggtaataatagcttggtta 424
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 agatacatgcttatcatgaagcctggagtgtgtgtgagcttggtaataatagcttggtta 624

                                                                       
Query: 425 gtgggctgtcttcatgccaccatcttgacctctttaacctttcaattagtctactgtgca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgggctgtcttcatgccaccatcttgacctctttaacctttcaattagtctactgtgca 684

                                                                       
Query: 485 tccaaccaagtggactatttcttctgtgatcttcctgcagttttacccctggcttgtact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccaaccaagtggactatttcttctgtgatcttcctgcagttttacccctggcttgtact 744

                                                                       
Query: 545 gacagtaagttggcccggaaggtgggttccatcaatgttggctttctggctctgatgctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacagtaagttggcccggaaggtgggttccatcaatgttggctttctggctctgatgctt 804

                                                                       
Query: 605 ctcttcagtgtttgtgtctcttatgtacacattggggttgccattctgaggatccgttca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctcttcagtgtttgtgtctcttatgtacacattggggttgccattctgaggatccgttca 864

                                                            
Query: 665 gcagagggcaggcagaaagcattctccacctgcagtgtccacctcactg 713
           ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 865 gcagagggcaggcagaaagcattctccacctgcagtgcccacctcactg 913


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no189_d23.g1 MSMg01no189_d23.g1 CHROMAT_FILE:
MSMg01no189_d23.g1 PHD_FILE: MSMg01no189_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:11 2005
         (349 letters)



>mm_chr9_39450403_39451151
          Length = 749

 Score =  636 bits (329), Expect = 0.0
 Identities = 344/349 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagagttgagatgacagcaaaatgaaagaattgccaaaataagatggaaagacagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttagagttgagatgacagcaaaatgaaagaattgccaaaataagatggaaagacagaagt 301

                                                                       
Query: 61  ggccttgaattgggcacagcaggtagagaatgctttctgcctgctctctgctaacagatt 120
           |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 300 ggccttgagttgggcacaacaggtagagaatgctttctgcctgctctctgctaacatatt 241

                                                                       
Query: 121 ttcagaatgtcaatcctaatgtgtgcttaagagacacaaactttcagcaaacgcttgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttcagaatgtcaatcctaatgtgtgcttaagagacacaaactttcagcaaacgcttgcta 181

                                                                       
Query: 181 gtgtatgcaatggtgtcatcgtttggaggctaattatgggatggatccctggatatggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gtgtatgcaatggtgtcatcgtttggaggctaattatgggatggatccctggatatggca 121

                                                                       
Query: 241 gtctctagatggtccatccttttgtctcagctccaaactttgtctctgtaactccttcca 300
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 120 gtctctagatggtccagccttttgtctcagctccaaacttagtctctgtaactccttcca 61

                                                            
Query: 301 tgggtgattgtttccaattctaagaaggggcaaagtgtccacactttgg 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  tgggtgattgtttccaattctaagaaggggcaaagtgtccacactttgg 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)