CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTATGCATTGGGGTATCTATGAGAATTTGGAAGTTAACATGAATAG
TTTGTGCCAAGTAAATAACCAGCCTACCACACAGCAATGATTCTTACCCC
TGAGCATGTTTCACAATGCCCAGAGTGTATGTAAACTCCCTGAACACACC
CTCAGTGATTTGCTTTGGTAGGTCTGTAACATGGACTGGGTGCATCTGGT
GTTAGCCATTATCTAGAATTTATTAAAAGAACCAATATCTTAGTCTAATG
TGTGCATTCTGGACACACACTGGCTTAAACTGAATCTAACCTTTGTGGGG
CTGCCTGATCTTTTTCCACCCCCCCGACCTTCATAGACCTCATGTGAATG
AGAAAAGATATTTTTATTTTACAAAAGTGATCTAATAATATCACTTGTCT
CTCAATGCTGTCATGAAAATTCACACCCTTTTGTGCTATATTGTCTACAA
AGTATGCCTTATCTATATCTTTCTACACTATTTCGCCATATTTTGCTTTA
CCGATTTTGGCTATTTTACCCCCAACCGGAACGTTTCATAGCTC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGTCCGTCCGATGGTGACGGTAGA
CTTCCGAGTAGACACAGTAGAGGCCACTATGACAGCTTTTTCAATCCAGT
TATGAAAGCATTTGCAGTTCAAAGCAGGTGAAACAAGAATGCAATCTTAG
CGCGGAATGCTCATTTGTAGCTGAGTATTTCAATAAATAAAATGGTGGGG
GAAATGAAAGCAGACCTGTTGTCTCCAACCCACTAAATTTAATATCCAGG
CTATTGACTGACAGCTTTTTATCACCATAATTAGTATGGATTGTTCCTGA
GGCCATTGATCAGCCTTCCTACCTCTCTGGACTTCAGTTGTTGCTTTTTT
CTCTCCCTCTGGTCCTCCCCACCCTTTTATTTCAATATTGATTTTGACAG
TGGTGTTCTACCGCAGAGAGATTGCTCACTCAGACAAAAGAAAACCCAGG
GTGACATCACCCTTCTCTTCTCTGCTGACCTGTGACCTGACTCCTTGGTA
CCACTGGCCTTCTGCTCCTTTGTTCTGTACACAGGATTATGTTCTGGGAA
AAGCTACAGGGAATCAGCCATGAAGCCCGTGTTCAGTGGACACCTGTCCA
ATAAGTTAATATTCCTATTTACTCTGCCTGGGCAGAGTAACAGAATAGGA
TAGACTGAAGATGCATT

Query= MSMg01no189_j03.b1 MSMg01no189_j03.b1 CHROMAT_FILE:
MSMg01no189_j03.b1 PHD_FILE: MSMg01no189_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:35 2005
         (313 letters)



>mm_chr9_28906483_28907195
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctatgcattggggtatctatgagaatttggaagttaacatgaatagtttgtgcc 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcctatgcattggggtatctatgagaattaggaagttaacatgaatagtttgtgcc 264

                                                                       
Query: 65  aagtaaataaccagcctaccacacagcaatgattcttacccctgagcatgtttcacaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtaaataaccagcctaccacacagcaatgattcttacccctgagcatgtttcacaatg 324

                                                                       
Query: 125 cccagagtgtatgtaaactccctgaacacaccctcagtgatttgctttggtaggtctgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccagagtgtatgtaaactccctgaacacaccctcagtgatttgctttggtaggtctgta 384

                                                                       
Query: 185 acatggactgggtgcatctggtgttagccattatctagaatttattaaaagaaccaatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatggactgggtgcatctggtgttagccattatctagaatttattaaaagaaccaatat 444

                                                                       
Query: 245 cttagtctaatgtgtgcattctggacacacactggcttaaactgaatctaacctttgtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttagtctaatgtgtgcattctggacacacactggcttaaactgaatctaacctttgtgg 504

                    
Query: 305 ggctgcctg 313
           |||||||||
Sbjct: 505 ggctgcctg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no189_j03.g1 MSMg01no189_j03.g1 CHROMAT_FILE:
MSMg01no189_j03.g1 PHD_FILE: MSMg01no189_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:35 2005
         (633 letters)



>mm_chr9_29032243_29033275
          Length = 1033

 Score = 1201 bits (621), Expect = 0.0
 Identities = 630/633 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtccgtccgatggtgacggtagacttccgagtagacacagtagaggccactatgacagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 833 cgtccgtccgatggtgacggtagacttccgagtagacacagtagaggggactatgacagc 774

                                                                       
Query: 61  tttttcaatccagttatgaaagcatttgcagttcaaagcaggtgaaacaagaatgcaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tttttcaatccagttatgaaagcatttgcagttcaaagcaggtgaaacaagaatgcaatc 714

                                                                       
Query: 121 ttagcgcggaatgctcatttgtagctgagtatttcaataaataaaatggtgggggaaatg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttagcgcggaatgctcatttgtatctgagtatttcaataaataaaatggtgggggaaatg 654

                                                                       
Query: 181 aaagcagacctgttgtctccaacccactaaatttaatatccaggctattgactgacagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaagcagacctgttgtctccaacccactaaatttaatatccaggctattgactgacagct 594

                                                                       
Query: 241 ttttatcaccataattagtatggattgttcctgaggccattgatcagccttcctacctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttttatcaccataattagtatggattgttcctgaggccattgatcagccttcctacctct 534

                                                                       
Query: 301 ctggacttcagttgttgcttttttctctccctctggtcctccccacccttttatttcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctggacttcagttgttgcttttttctctccctctggtcctccccacccttttatttcaat 474

                                                                       
Query: 361 attgattttgacagtggtgttctaccgcagagagattgctcactcagacaaaagaaaacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 attgattttgacagtggtgttctaccgcagagagattgctcactcagacaaaagaaaacc 414

                                                                       
Query: 421 cagggtgacatcacccttctcttctctgctgacctgtgacctgactccttggtaccactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cagggtgacatcacccttctcttctctgctgacctgtgacctgactccttggtaccactg 354

                                                                       
Query: 481 gccttctgctcctttgttctgtacacaggattatgttctgggaaaagctacagggaatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gccttctgctcctttgttctgtacacaggattatgttctgggaaaagctacagggaatca 294

                                                                       
Query: 541 gccatgaagcccgtgttcagtggacacctgtccaataagttaatattcctatttactctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gccatgaagcccgtgttcagtggacacctgtccaataagttaatattcctatttactctg 234

                                            
Query: 601 cctgggcagagtaacagaataggatagactgaa 633
           |||||||||||||||||||||||||||||||||
Sbjct: 233 cctgggcagagtaacagaataggatagactgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)