BAC Information

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BAC

Clone NameMSMg01-189J17
Chromosome9 (Build37)
Map Location 107,714,918 - 107,715,270
singlet/doubletsinglet
Overlap geneRbm6
Upstream geneLOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
Downstream geneMon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189J17.T7 (MSMg01no189_j17.b1)MSMg01-189J17.TJ (MSMg01no189_j17.g1)
ACCAG380234AG380235
length755738
length of high quality
(start - end)		309 (45 - 353)354 (385 - 738)
definitionCHROMAT_FILE: MSMg01no189_j17.b1 PHD_FILE: MSMg01no189_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:37 2005CHROMAT_FILE: MSMg01no189_j17.g1 PHD_FILE: MSMg01no189_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC
TGCCTCCCGAGTGCTGGGATCAAAGGCATGCGCCACCACGCCCAGCGCAA
AGTTATTTATTTTTATGTGTATAGTTGTTTGGCCTGCATGTATACCTGTG
TCTATGTGTGCCTAGTATCTATGGAGGCCAGAAGAGGGGGTTGGATCCCC
TGGAACTGGAGTTATAGTTATGAGCCGTTGTTTTGGTGCTGGGGACTGAA
CCCAAGCCCTTTGGATTATCAACCAGTGCTTTTAACCACTGCACGATTTC
TCATTTTTTTCCTACGCCACCCCACCATTTGCTCCATAGAAATGCATGCA
TTTGAGCCAAGTGTCCCTCAAGAGTTCCAGGTCAACTTGGGCAACATAGA
GAGTTCCCGTCAAAGAGAGGGCGGGAGAGATAGAGGCAGGCATACATTTA
TGCCTCAGGACACTTGGCTAACAACTCTCATAATTGCCATATCCATAATT
GCTAAAAGCTGGACCGAGTCCTTATTATCCACCCCCAGCATGATGTATTG
TGGTATACCCTCATAATTACTATGTTATGTTGCTAAGCATATGATTGACC
TCATTTTTCTACTTCACCTTACAGTGTTATCTCTGCCATATTTTTTTCTT
TACCCCTTTATGTTACATTTTATTTTTCTCTGACCCCTTCTTTTTTCTTC
CCTCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAATAACAAGGTGGT
TCATAGCTATCTATAATGAGATTACCGAGATCTGGTGCCCTCTTCTGGCA
TGTAAGCATACATACAGGCACAACACTGCAAAACAAACAAACAAACAAAC
AAATAAATAAATCGTTAAAAAAGGAAAAAAAGGTGATGCTGTGTAGTAAT
TTCTGAATTCAAACATTCCATCCTGGATAGTGAGCTCAGGACAGATAGAC
AGACAGACAAACACACACACACACACACACACACAAAATTGGTGATATAG
TCTTAAGACTAGAAAACTGTACAATGATGCAAATTAAAAAAAAAACCAGC
AACACTTGTACTACATCAAAAAAATGAATTTTAGAAATGATACTCAAAGC
AGGACATGGCGGCACATTCCTGTAATCCCAGCAGCAGTAAGTTTAGGCAA
GGAAGACTGCATTTAGTTTACAAAACAACCTCAATTACATAGGTAATACT
AGGCTGGCTATGGTTTCGTAGTAAGACTGCCTAAAAAACAAGTCAACAGT
GGGCCAGTAAGAGAGCTCAATAGCTAAAGACCCTTGCAACCAAACCTTAT
CAACTAAGTTCAAGTCCTAGATCACACATGCTAGAAGACAACTGCCACAC
AGCCACAGCACTTGTACCCCACCGCAAAAATGGTGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_j17.g1 MSMg01no189_j17.g1 CHROMAT_FILE:
MSMg01no189_j17.g1 PHD_FILE: MSMg01no189_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:37 2005
         (354 letters)



>mm_chr9_107714717_107715470
          Length = 754

 Score =  654 bits (338), Expect = 0.0
 Identities = 350/354 (98%), Gaps = 1/354 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaaaaaaaccagcaacacttgtactacatcaaaaaaatgaattttagaaatgatact 60
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taaaaaaaaaa-caggaacacttgtactacatcaaaaaaatgaattttagaaatgatact 260

                                                                       
Query: 61  caaagcaggacatggcggcacattcctgtaatcccagcagcagtaagtttaggcaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 caaagcaggacatggcggcacattcctgtaatcccagcagcagtaagcttaggcaaggaa 320

                                                                       
Query: 121 gactgcatttagtttacaaaacaacctcaattacataggtaatactaggctggctatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgcatttagtttacaaaacaacctcaattacataggtaatactaggctggctatggt 380

                                                                       
Query: 181 ttcgtagtaagactgcctaaaaaacaagtcaacagtgggccagtaagagagctcaatagc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatagtaagactgcctaaaaaacaagtcaacagtgggccagtaagagagctcaatagc 440

                                                                       
Query: 241 taaagacccttgcaaccaaaccttatcaactaagttcaagtcctagatcacacatgctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagacccttgcaaccaaaccttatcaactaagttcaagtcctagatcacacatgctag 500

                                                                 
Query: 301 aagacaactgccacacagccacagcacttgtaccccaccgcaaaaatggtggga 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagacaactgccacacagccacagcacttgtaccccaccgcaaaaatggtggga 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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