Query= MSMg01no189_k17.b1 MSMg01no189_k17.b1 CHROMAT_FILE:
MSMg01no189_k17.b1 PHD_FILE: MSMg01no189_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:42 2005
(318 letters)
>mm_chr9_55161944_55162661
Length = 718
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%), Gaps = 2/312 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgcccccagtgcaggggctgaagggccaatataggaatataagtcgtccact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgcccccagtgcaggggctgaagggccaatataggaatataagtcgtccact 264
Query: 65 catactcccaccttgccttcccctttctgagcatgtatgttttccctaacatttcaggct 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catactcccaccttgtcttcccctttctgagcatgtatgttttccctaacatttcaggct 324
Query: 125 ctccccgaccaatactttggatatcctttccctttctctgaagctccgctccctgccctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccccgaccaatactttggatatcctttccctttctctgaagctccgctccctgccctg 384
Query: 185 tggctgcttgctggccatgtgtctgacctccatgctggcagctcttccttctcttctcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggctgcttgctggccatgtgtctgacctccatgctggcagctcttccttctcttctcca 444
Query: 245 ggcagctgctttactgtacacctgccctatagcttt-ccttttaaacgctgataaaatta 303
|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct: 445 ggcagctgctttactgtacacctgccctttag-tttgccttttaaacgctgataaaatta 503
Query: 304 tccttgtgtttc 315
||||||||||||
Sbjct: 504 tccttgtgtttc 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_k17.g1 MSMg01no189_k17.g1 CHROMAT_FILE:
MSMg01no189_k17.g1 PHD_FILE: MSMg01no189_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:42 2005
(234 letters)
>mm_chr9_55246746_55247378
Length = 633
Score = 422 bits (218), Expect = e-122
Identities = 230/234 (98%), Gaps = 1/234 (0%)
Strand = Plus / Minus
Query: 1 ttttatggaatttaagatgccttttatgggctgctattggatctcccaccaaaatcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttttatggaatttaagatgccttttatgggctgctattggatctcccaccaaaatcaatc 374
Query: 61 tcctggatacttaattttaagcaaaattccagtgtcggctgccttctcagttctacctga 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 373 tcctggatacttaattttaagcaaaattccagtgtcggctgctttctcagttctacctga 314
Query: 121 agcctcgtcacagcccgaggagctctgggccccagcacaatccaccatagagaaagaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agcctcgtcacagcccgaggagctctgggccccagcacaatccaccatagagaaagaagg 254
Query: 181 actccattatggttaggtctcataaaacgcagacagtctggatgtgtcggaggg 234
|||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 253 actccattatggttaggtctcataaaacgcaggcagtctggatgcgt-ggaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space: 140400
Effective search space used: 140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
