Query= MSMg01no189_o14.b1 MSMg01no189_o14.b1 CHROMAT_FILE:
MSMg01no189_o14.b1 PHD_FILE: MSMg01no189_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:00 2005
(317 letters)
>mm_chr9_20826124_20826840
Length = 717
Score = 580 bits (300), Expect = e-170
Identities = 309/312 (99%)
Strand = Plus / Minus
Query: 4 ggaattcactatgtagaccagactagtcttaaactctaccttccaagtgacagacagaaa 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 553 ggaattcactatgtagaccagactagtcttaaactctgccttccaagtgacagacagaaa 494
Query: 64 tgcagcaaagccagaattccagccccagtcttgggtttctaagatcaggtaccaggggga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgcagcaaagccagaattccagccccagtcttgggtttctaagatcaggtaccaggggga 434
Query: 124 agttcttcaagagggacttcccaaggccacaaggaatgcttggggacttccctctctcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agttcttcaagagggacttcccaaggccacaaggaatgcttggggacttccctctctcca 374
Query: 184 gggcagcactggcacatacaaccacatcctccaaaccacaagctacactgagatttcccg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gggcagcactggcacatacaaccacatcctccaaaccacaagctacactgagatttcccg 314
Query: 244 aaggcttctgtccagctaccaccaagactgatggtctttaggcttccctgtatcatacca 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 313 aaggcttctgtccagctaccaccaagactgatggcctttaggcttccctgtatcatacca 254
Query: 304 cggtgtgacatg 315
|||| |||||||
Sbjct: 253 cggtttgacatg 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_o14.g1 MSMg01no189_o14.g1 CHROMAT_FILE:
MSMg01no189_o14.g1 PHD_FILE: MSMg01no189_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:00 2005
(285 letters)
>mm_chr9_20690144_20690828
Length = 685
Score = 493 bits (255), Expect = e-144
Identities = 274/283 (96%), Gaps = 7/283 (2%)
Strand = Plus / Plus
Query: 1 caaactagcctggtctacataatgaaaccctgactcaaacaataagaaaaagagaaagat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 caaactagcctggtctacataatgaaaccctgactcaaacaataagaaaaagagaaggat 260
Query: 61 gagtgtgctcacattcctgtgtatgctcacactttaaaatgaagatagccactaggcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgtgctcacattcctgtgtatgctcacactttaaaatgaagatagccactaggcagt 320
Query: 121 gatggggcacacctctgatcccagcactcagaaca--gaggcaggaggggaccaaggcca 178
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gatggggcacgcctctgatcccagcactcagaacacagaggcaggaggggaccaaggcca 380
Query: 179 gcctggtctacagtacagaactaatttcagaaaagccagggctacacaaagaaaccctgt 238
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctggtctacag---ag--ctaatttcagaaaagccagggctacacaaagaaaccctgt 435
Query: 239 ctccaaaaacccagggagtcaggggaagaaagaaagaaaatag 281
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctccaaaaacccagggagtcaggggaagaaagaaagaaaatag 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
