BAC Information

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BAC

Clone NameMSMg01-191A24
Chromosome9 (Build37)
Map Location 111,599,361 - 111,599,670
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191A24.T7 (MSMg01no191_a24.b1)MSMg01-191A24.TJ (MSMg01no191_a24.g1)
ACCAG381208AG381209
length716723
length of high quality
(start - end)
314 (45 - 358)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no191_a24.b1 PHD_FILE: MSMg01no191_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:32 2005CHROMAT_FILE: MSMg01no191_a24.g1 PHD_FILE: MSMg01no191_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTTTTCATGAGTCCTTGATGCTTAAATGCTCACGTGACAGGAAG
TGTTTATTAAATGAATGAGTAGATGAATGAAAAGATGTCAGCGTTGGAGA
GGTACATAGAAAGTGAATGAAAAACATTCTTCAGAGGAAGAAAAAGCAGG
CCCAGGATTGCCACAAATGGATTTGTATTAAACTGCCTTCAAATGGCTTA
TCTTTATATCTACAGATTAGTGCATCTCATTCTGCTCATCAAAGGTGCTT
CTATTTGCAGTAGGTGGTGATTAACATAGAGATTCACAACTAGTCACAGT
GAATACATTAATTAGATACGNAGCATTNCCACCCTTCACTAGGACATATA
TATCACATCACCCCAACCCACCAAAAAATAAAAGGCTCAGAGATCGCTGT
GGAAGAGAGGGCAGAAAAACTGTAAGATCCAGTGGCTGTAGATGACCATC
AGGACACAGCGGGGTTTTACACATATGAACTCATAGTGCTTGTAACAGCA
TGCACAAGACTGGTGCTAACTCAGGTCAGACAAAATCCCAGCATGGGGAG
GGGAGGTCTGTACAAAGTCCAACCCCTGATGGAGGAATTATTGGCCATTA
GTAGTTTCTGGGAGAGAAAGAGTCAGCTCTGTTTTAAGAGAGTCAACTCT
AGTTGGCCAAAGGCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATTCAGAG
AAACCCTGTCTCAAAAACAAAAACAAAAACAACAAAAAAAGAATAATGAA
GAAAAATTAAGGTTGGGTGTCAATCTCAGATCTCCATATACCTGCCACTC
ACATTTGCATTCACACATGAGCCCTCACACATGTAAACACACATACAAGT
GGACACTGCACACACAGACACATGCAAAGAAACAAACACAAACTGTCAAT
GAGTATCACTAAGGGACGTGTCAGCCTGGAGGGCTGGGAAGATAAGTGGG
TTCAGGTTGAATTCCTAGTTACCCANATCGGNCCCATCCCTTCTGAGTGG
AATAGCATAGAAAGCCCATGTGATGCAGAAAAAAAAAGTGAGCTCTGAAC
AATGAGGATGGGAGAAATGTATACACTACCACAAAGAACCAAAAGTCAAA
ACAAGATAGGTTTCAGAAGTGGTAGCAGTGCCCCCAAAAGATGACTCTCA
ATGATGCAAACCTCATTCCAGCTGCCCAGAAGTAGCTGGTATATGCATGG
CCAGTGGGAAATGGACATCAGAGGTTGTCACTGAGCATGCTTCTGCAAGG
GAAGTCATCAGATTTCATTGCCAATGAAGAAGCTCTGGGCACGTTTTCAT
CTTCATCTCTTCTCCCCATTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_a24.b1 MSMg01no191_a24.b1 CHROMAT_FILE:
MSMg01no191_a24.b1 PHD_FILE: MSMg01no191_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:32 2005
         (314 letters)



>mm_chr9_111599157_111599870
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccttttcatgagtccttgatgcttaaatgctcacgtgacaggaagtgtttatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccttttcatgagtccttgatgcttaaatgctcacgtgacaggaagtgtttatt 264

                                                                       
Query: 65  aaatgaatgagtagatgaatgaaaagatgtcagcgttggagaggtacatagaaagtgaat 124
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatgaatgagtaggtggatgaaaagatgtcagcgttggagaggtacatagaaagtgaat 324

                                                                       
Query: 125 gaaaaacattcttcagaggaagaaaaagcaggcccaggattgccacaaatggatttgtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaaacattcttcagaggaagaaaaagcaggcccaggattgccacaaatggatttgtat 384

                                                                       
Query: 185 taaactgccttcaaatggcttatctttatatctacagattagtgcatctcattctgctca 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 taaactgccttcaaatggcttatctttatatctacagattagtgcatctcgttctgctca 444

                                                                       
Query: 245 tcaaaggtgcttctatttgcagtaggtggtgattaacatagagattcacaactagtcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaaggtgcttctatttgcagtaggtggtgattaacatagagattcacaactagtcaca 504

                     
Query: 305 gtgaatacat 314
           ||||||||||
Sbjct: 505 gtgaatacat 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)