BAC Information

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BAC

Clone NameMSMg01-191M20
Chromosome9 (Build37)
Map Location 20,563,457 - 20,563,764
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Downstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191M20.T7 (MSMg01no191_m20.b1)MSMg01-191M20.TJ (MSMg01no191_m20.g1)
ACCAG381685AG381686
length718736
length of high quality
(start - end)
313 (45 - 357)116 (77 - 192)
definitionCHROMAT_FILE: MSMg01no191_m20.b1 PHD_FILE: MSMg01no191_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:33 2005CHROMAT_FILE: MSMg01no191_m20.g1 PHD_FILE: MSMg01no191_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCCCTGAGCTGAGGACCCCTGAACTCCTGATTCCTCTGCTTCCAC
CTCTGAGCTGGCACGGTGACAGGCATGCACTACCATACTCACTGTGACTG
CCGGCGCTGTGGTGTTTGTACATCAGTTGCTTAAGATTCTGCCAGAGCAA
CTGGAGGCCCAGTTCCCATCTCTGTTACTGGGTCAAGGAGCGCATGCATG
TGCCTGATGCTGGCAGGTCCCCAGTTCTCAGGCAGCAGTGGAAAGACACT
GACAACTGACTGAAGGGAGGAAGAAGTCTGCGGTGAGCCCAAGGGTCTGG
GTGAATTTTTTGCCTCCCCCGCCCAGCTTCTCTGGGGACACAGATGGGGC
CTGTTCTCCATGCTGTGGAGGAAGATAGGCAGGGGGGATTGGGAGACTGA
TGTGGATGCTGTCTGGCAGGATCCTGAGGAGATGCCAGATGGCAGAAGTG
AGGAAGCACTACCTCACCCTGGCGTGGACAGGCCCCACAGACACTCCTGC
TACCTCCAAATCTGGAAAGGACTGGAGCTGGCGCTGTGTTGATAGAGTGC
TTGTCTACCCTGAAAGCTCTGGGTCCCATCCCAGCACCATATAAACTAGA
TGTGGGGATGCACCTATCAGATCAGCACTAAACAGTGCAATCAAGAGGAC
CATTAGCTCTAGGTCATC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCCAGCACTGCACTGCATAA
ACCATGTATGGACACACTATAATCATATATATATATATATATATATATAT
ATATATATATATATATATATATATATAGAGAGAGAGAGAGAGTGTGTGTG
TGTGTGTGTGTGTGGGTGTGGGGGGGGGGGTCGGTGTGTGGGTGNGTGTG
TGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGTGGTTGTTTTTTTGCGTGAGAGAGCTAGAGAGAGATA
TAGTTTTTTTTTTTCCCCCCCGGACGGCCCCCGAAAAGGAGGGAAGGGGA
AGGGGGGATTNNANNACCAAATAAAAAAAAAAAAAAGGGGGGGGGGGGGG
GGGGGACAGCAANAAAGAGGCGAAACCCGCCCGGCGCNCGGGCCAATGCG
CGCCCCCGCGGGGCCATGGTCCGCCTCTGCCCCCCCCGATGCGCCGCTGC
CAACTGGCCCCCCTGGCCCCTTCGCGGGGGGCGAGGGGGAGTGTGCGGAC
GGCCGGGGCCGTCCCGCGCCGGCTAGGGGGCCCCCGTGCCGGGGTGGAGC
CGGGACGGGCACCTGGGTTTCCCCGGGGGGCGGCCCCCCCGCGTTCCGGG
CGCCCCGTCGCCCGCTACCGACGGACCCGGTGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_m20.b1 MSMg01no191_m20.b1 CHROMAT_FILE:
MSMg01no191_m20.b1 PHD_FILE: MSMg01no191_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:33 2005
         (313 letters)



>mm_chr9_20563253_20563966
          Length = 714

 Score =  520 bits (269), Expect = e-152
 Identities = 298/311 (95%), Gaps = 7/311 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccctgagctgaggacccctgaactcctgat----tcctctgcttccacctct 60
           ||||||||| ||||||||||||||| ||||||||||||     || | ||||||||||||
Sbjct: 512 gaattcaccactgagctgaggacccttgaactcctgatccccccccccgcttccacctct 453

                                                                       
Query: 61  gagctggcacggtgacaggcatgcactaccatactcactgtgactgccggcgctgtggtg 120
           |||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 452 gagctgg---ggtgacaggcatgcactaccacactcactgtgactgccggcgctgtggtg 396

                                                                       
Query: 121 tttgtacatcagttgcttaagattctgccagagcaactggaggcccagttcccatctctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttgtacatcagttgcttaagattctgccagagcaactggaggcccagttcccatctctg 336

                                                                       
Query: 181 ttactgggtcaaggagcgcatgcatgtgcctgatgctggcaggtccccagttctcaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttactgggtcaaggagcgcatgcatgtgcctgatgctggcaggtccccagttctcaggca 276

                                                                       
Query: 241 gcagtggaaagacactgacaactgactgaagggaggaagaagtctgcggtgagcccaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcagtggaaagacactgacaactgactgaagggaggaagaagtctgcggtgagcccaagg 216

                      
Query: 301 gtctgggtgaa 311
           |||||||||||
Sbjct: 215 gtctgggtgaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space:   214320
Effective search space used:   214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)