MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-192C21
Chromosome	9 (Build37)
Map Location	89,388,006 - 89,388,152
singlet/doublet	singlet
Overlap gene	none
Upstream gene	2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream gene	AF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Link	Open Mouse BAC browser

no map image available.

Click to get alignment info.

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-192C21.T7 (MSMg01no192_c21.b1)	MSMg01-192C21.TJ (MSMg01no192_c21.g1)
ACC	AG381942	AG381943
length	1,242	1,257
length of high quality (start - end)	427 (29 - 455)	148 (119 - 266)
definition	CHROMAT_FILE: MSMg01no192_c21.b1 PHD_FILE: MSMg01no192_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:12 2005	CHROMAT_FILE: MSMg01no192_c21.g1 PHD_FILE: MSMg01no192_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:12 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NNTTGCATTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT TTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTTCTGGA GTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCG ATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC TTCTTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTC CCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCA GGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCC TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCTTCTT ATATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTTTTT TTTTCCCCCCCCCCCTATTTTAAGCTAGGAACTGAAAAAAGAGTGTCTAC NGTCCAACCTACGCCCCGTTTTTCACATAAACTATTATTCATTTAGGAAT CATCCGAGGACGCCTTTATGCTACAGGATAGAGTTGATCAGTTGCCTGAT AAACCTGATGGCTCCCACAGACTATTTTATTCTACTTTTATTCCTTTACC CAAAAGATTGTAAACTTATGTTCAGTTACAATATCTTTGTCTATTGGTTT CTCTCATAGCACTTATTACCCTCCTCTGTCTTGTTGTGTCTTGTTAATCT TACGGTACGTTGTTTTAATCTCTTTCTTATGTTTTTTCTCAGTTTCCTTT TTCTAATTATTTTTTATTTTCCTTCTTTCTTTCATTTCTTTTCCTTTTTT ATCTCCTTTTTTTTTGTCTTTTTTTTCTTTCTCTCTCTATTTTTCGTAAT CTCTTTTCTTTTTTCTTTATCTCTTTCTTATTCTTTCTTTTCGTGATTCT TTTTATAATTTTTTTTATTTCTTTTTTTATTCTTCTTTTATTCCTTTTAT ATTCACTTTTATTTTCTTCTTTTCCTTCTGATTCTTTATTCTTTCTTTTT TTTTTTTTTTCTTTTTCTTCCTTCCCTTCTTCTCTTTGCTTTCTCTTTTT TGTTATTTTTTCCTTTTTTTTTTCTTCTTTCCTTTTCTCTTTTTCTCTTT TTTTCTTATCTCTTTTTCATTCTTTTCTTCTCTTTCCTTTTTTACTCTTT ATCTTTTCTTTTACCTTCTCTCTCTCTCTTCTTTTCTTTCTG	TTTTTCACCAGTGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXTAAAGTACGTCCTAGAAACAGGAAAGAGG GTCACATTTCCTTAAAAGTAAAATCTAATTCATAAAGTTAAAACCTTAAC GACTGCCATTCTTAACAAGCAACATTCAATCTTGCATGTATATGTAGATA TTAAATGTACATACACATGCAAACAGAGAGGGGGGGGGAGAGAGAGGGAG AGAGAGAGAGAGAATANAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT ANNNNNNNNNNNNNNNTNNNNGNNNNNNTTTNNATATATAAATATATTAT TAATATTTATTATTTTGTTTGATTATTTTTTTATTATTATTTATTTTTTT TTTTTTTAATATTGTGAATAAAAATTTTATTTTTGTGTAGAAAAATGTTT TTTTTTTTTTCCCCCCCCCCAATTTTCTCTTCTTTCTAAAAAAAAAAAGT CTTTTCTCTTTCTCTTTCTTTCTAAATTCTTCTTCATTCTTTCTCTATCC TCTTAAATTCTTCTTTTCCTTTTCTATTCTTTTTTTCTCTTTTCCTTTTT CACTATTACCTTTCTTCCCCTATCTCCTTTCCCTTTCTTCCTCTCCTTTT TTTTCTTCTCCTCCTTTCTATTTTTTATTCTTCCTTCTTTTTTCTTTTAC TATACTTTATCTCTTTTTTTTCTACTCCTTTTTTATTCCATTCTTTCTTT TCTCTCTCTTTTTTTAACTATTCTTCTCATTATTATTTCTTCTTCTCTTC TTTCCCCTTTACTCTTCCTTTTCCTTTCTCTCTTTCTTTTCCTTTCTCTC TCCTCTTTTTACTCTTCAACTCTTCTTTTTTTCTTTCTACTCTTCTCTTT ATTCCTTCCTTTTTCCTACTTTACAATCTTACCTTATTCTAATTTCCTTC TATTATCTTTTTTTTATTTCTCTCCTTTCTTCTCTTCTTTTTCCTCCCTT TTTTTTTTTTCTTTTTTCCTTTCCTTCCTTACTTTTCTCCTCCTTTTCTC CTTTACCTTCTTTTTTCATTCTTTTTTTTTTTACTTTTTTCTATCCCCTT CCTCTCTTTCTTTATCCTCTCTATTTTTTTNTCTTCCTTTCTCTACTATT CTTTCTTCTTATCTTATTTTCTTAATTCTTTTTTCCTCTTATTTTTTCAT TACTATTTCATTCTTCTATTTTTCCTTTTCCTCTCCACCAACTATTCATT CCCTTCC
quality values	Open. Hide. 0 0 3 6 6 6 7 7 12 8 8 12 14 17 14 10 10 8 8 8 15 19 10 8 8 8 8 8 15 21 37 33 37 33 33 36 37 42 42 53 51 68 68 68 53 53 50 68 68 68 51 50 50 42 42 41 41 41 48 48 68 54 57 57 57 57 57 57 57 57 57 57 59 50 51 50 47 47 51 57 57 57 57 47 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 50 51 51 51 51 50 57 57 57 57 57 57 68 51 50 50 50 50 50 57 57 57 57 52 52 52 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 68 57 57 57 57 57 57 57 57 57 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 44 43 18 15 12 12 15 33 33 57 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 57 59 59 59 57 57 57 57 57 57 68 57 57 57 57 57 57 68 68 57 57 52 52 52 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 68 68 68 57 57 57 59 59 68 68 68 68 68 68 68 59 59 57 57 57 57 59 59 59 59 57 57 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 59 44 48 48 57 57 57 57 59 59 59 59 57 57 57 57 57 57 59 59 59 59 68 68 68 68 59 59 59 59 59 59 59 57 57 57 57 54 54 57 57 59 59 48 48 43 59 59 48 59 59 59 59 57 57 57 37 37 30 30 30 37 37 47 59 23 17 10 8 8 8 8 9 10 10 10 12 19 33 41 48 48 53 50 39 47 35 35 28 43 25 25 25 33 34 36 36 36 43 40 37 35 35 35 32 39 39 57 48 48 48 48 43 30 30 23 23 16 23 20 17 27 29 29 26 18 15 10 9 8 8 8 8 14 11 14 9 9 10 11 21 30 41 39 39 22 22 12 12 12 11 11 11 12 15 9 10 10 11 13 14 21 12 12 10 10 10 10 10 9 9 13 13 3 0 3 22 22 21 15 14 14 15 28 30 22 22 22 31 29 30 34 33 33 33 30 30 17 18 17 18 26 24 12 12 9 9 10 19 22 37 33 33 24 24 23 28 22 12 12 13 14 17 24 24 24 8 10 6 6 8 8 15 28 25 25 25 25 23 23 11 11 11 12 12 16 15 11 10 10 9 8 8 8 8 8 8 10 10 8 8 8 10 9 9 11 18 13 12 12 10 9 9 14 13 11 11 10 10 10 10 10 13 10 10 10 10 12 9 12 9 9 8 9 9 9 9 10 15 12 12 11 8 8 10 8 8 8 6 6 10 15 10 12 12 16 13 26 24 24 10 11 10 10 10 12 11 10 13 10 10 11 16 12 13 21 13 15 13 12 10 10 8 8 8 8 8 8 8 9 9 10 10 10 10 10 10 10 13 10 8 8 10 8 8 8 6 6 8 6 11 13 13 15 9 9 9 9 7 7 11 10 10 10 10 15 8 8 8 6 6 8 8 10 11 11 8 8 12 18 11 11 11 9 10 10 15 15 8 9 9 9 10 9 9 8 8 8 9 8 9 10 11 12 10 10 10 8 8 8 10 8 8 8 6 6 8 8 11 11 11 11 8 8 8 8 8 8 10 10 11 13 10 12 12 14 19 18 19 8 8 8 8 8 8 6 6 8 8 8 8 8 10 10 14 9 9 8 8 8 8 10 10 10 10 9 8 8 8 10 8 8 8 8 8 10 8 10 6 6 8 8 10 10 10 10 6 6 8 8 8 8 8 11 13 16 12 10 10 11 10 10 8 8 8 8 12 9 9 9 10 10 12 15 12 12 12 11 8 8 8 8 8 8 10 13 16 15 19 15 15 15 19 15 15 8 8 10 10 6 6 8 9 9 9 12 8 8 7 7 8 8 8 8 13 7 6 8 10 8 6 7 10 8 9 10 8 8 11 10 8 8 8 8 8 6 6 8 8 8 6 6 11 10 8 11 6 6 8 10 7 7 13 8 8 7 9 7 8 8 8 10 11 13 15 17 13 10 9 9 9 9 9 10 10 11 11 8 8 7 6 8 8 6 9 10 10 16 15 12 8 6 7 10 6 10 10 15 13 19 17 11 10 10 9 11 14 15 16 9 8 8 8 6 6 8 8 12 12 12 15 15 12 8 8 8 8 8 10 12 10 12 8 10 10 8 8 10 20 16 12 12 8 8 6 6 6 6 6 7 8 10 10 6 6 8 8 10 11 12 12 15 11 12 12 12 14 11 11 12 16 8 8 6 6 8 11 12 9 13 8 8 7 7 8 10 7 6 8 8 11 11 9 10 9 9 9 8 8 8 6 6 6 6 10 12 10 12 12 12 16 18 13 9 9 9 10 8 8 8 8 10 13 12 8 8 6 6 6 10 12 10 16 10 8 8 6 6 8 8 10 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 15 19 18 8 8 8 8 8 8 12 7 9 7 12 8 10 10 10 10 9 8 8 8 8 8 8 9 10 10 10 10 8 8 8 8 8 8 8 8 12 8 8 8 6 6 8 8 10 10 10 10 10 9 10 11 12 10 15 13 8 10 8 8 10 10 10 10 8 8 8 8 8 9 9 10 13 10 15 12 10 11 11 8 8 8 8 7 7 10 6 8 8 8	Open. Hide. 7 15 7 7 6 6 6 6 6 6 6 6 6 6 6 8 8 7 7 15 8 8 8 17 10 8 11 8 8 12 14 19 19 15 9 9 10 21 19 29 22 24 33 35 36 36 36 37 37 37 36 36 36 36 36 48 53 50 50 50 50 47 41 27 27 9 9 9 9 9 11 9 11 11 10 10 13 19 19 28 28 29 26 31 36 36 38 53 53 57 50 50 53 53 53 53 59 59 53 50 50 50 50 37 34 27 15 8 8 8 8 11 15 10 10 10 10 10 13 19 27 37 37 37 37 37 47 53 53 53 42 42 42 43 43 50 50 53 53 53 53 53 57 57 50 51 51 50 68 68 57 57 57 57 68 68 57 57 57 57 47 47 47 47 53 53 57 53 53 53 53 53 53 53 53 44 44 50 50 41 32 32 23 24 14 12 12 15 25 29 37 50 50 48 48 48 48 48 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 59 59 57 57 54 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 48 43 43 37 37 37 43 43 57 57 57 48 48 48 48 46 46 40 39 37 23 22 3 0 3 22 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 3 0 0 0 0 0 0 3 15 3 0 0 3 8 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 16 11 10 10 10 10 8 8 6 6 8 10 9 9 9 10 9 10 8 8 8 8 8 8 8 8 8 9 12 10 6 6 6 6 8 8 8 8 6 6 8 10 19 30 24 23 24 24 24 25 30 25 30 15 13 11 9 9 9 10 13 11 12 9 11 11 11 11 9 8 8 10 8 8 8 8 8 10 13 19 19 17 13 10 10 10 9 9 9 9 9 9 11 10 13 15 17 19 19 19 19 35 32 27 14 11 11 11 14 12 28 14 11 8 8 9 8 6 6 6 10 10 10 8 8 8 8 6 6 8 8 11 11 11 9 8 9 16 16 16 14 16 13 11 10 10 10 10 10 12 12 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 8 8 8 8 9 11 11 8 10 6 6 8 8 9 9 9 8 8 8 8 8 8 8 10 6 6 8 8 8 8 9 10 10 12 8 8 8 8 8 8 8 10 10 13 10 14 10 10 12 9 8 8 6 6 8 8 9 9 12 11 11 10 9 11 10 8 8 8 8 8 8 15 10 12 10 6 6 8 8 8 8 8 8 10 11 11 10 9 10 10 8 8 10 10 10 8 10 10 10 10 9 11 10 10 12 10 15 10 10 10 10 8 8 8 9 9 9 9 9 9 10 10 13 12 12 23 23 10 8 8 8 8 8 10 8 8 6 6 8 8 8 8 8 8 8 8 10 12 12 12 9 9 9 10 10 10 10 10 8 10 10 10 8 8 9 10 8 8 6 6 8 8 8 6 6 8 6 6 8 8 9 10 8 8 8 10 13 13 10 15 9 9 8 8 8 12 8 8 8 8 8 8 8 10 13 12 10 8 7 7 12 10 8 7 7 10 12 9 8 9 9 9 9 9 10 10 10 10 11 11 10 10 10 10 13 19 17 17 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 6 9 9 9 9 9 8 8 8 8 8 8 8 8 12 8 8 8 15 10 10 10 10 9 8 8 8 6 6 8 8 10 8 8 8 8 10 6 10 11 11 11 11 11 11 8 10 9 8 8 7 7 10 10 8 6 6 8 8 10 10 13 13 13 9 9 8 8 10 6 6 8 8 10 10 10 12 19 21 15 15 11 11 11 11 12 12 12 12 12 11 10 8 8 8 6 6 10 8 10 10 10 8 8 8 13 14 13 9 8 8 8 8 7 8 8 8 8 8 8 9 8 8 8 10 8 8 8 8 8 8 8 8 19 13 10 10 10 11 11 11 12 9 9 9 12 8 8 6 6 8 8 9 10 10 10 9 9 9 9 9 10 9 9 10 8 8 8 8 8 8 8 8 11 10 9 9 9 9 12 15 20 19 10 10 6 6 8 8 10 10 10 10 13 8 8 8 8 8 8 9 8 11 6 6 8 8 10 10 10 13 10 8 8 8 8 8 8 8 11 21 18 13 16 12 13 15 15 13 17 11 11 16 11 13 8 8 6 10 8 8 10 8 10 11 10 10 10 6 6 8 8 8 10 10 10 10 10 10 13 12 11 11 11 13 15 15 15 10 8 8 8 11 8 8 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 12 9 8 8 6 6 8 8 10 8 8 10 8 8 9 17 17 11 8 8 6 6 6 6 8 6 8 6 7 7 9 9 11 11 10 10 10 10 10 10 10 10 11 10 10 10 10 12 11 11 11 16 3 0 3 6 8 6 6 6 7 10 8 10 10 14 8 8 8 8 8 8 9 8 11 13 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 10 10 13 11 12 8 8 8 10 13 10 10 10 10 10 12 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 8 8 8 8 8 10 10 15 12 12 12 11 12 11 13 17 14 10 10 12 12 13 11 11 9 8 8 6 6 8 8 8 8 8 8 12 8 8 6 6 8 8 6

Alignment Information

BAC End 1	BAC End 2
	Query= MSMg01no192_c21.g1 MSMg01no192_c21.g1 CHROMAT_FILE: MSMg01no192_c21.g1 PHD_FILE: MSMg01no192_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:12 2005 (148 letters) >mm_chr9_89387851_89388397 Length = 547 Score = 194 bits (100), Expect = 3e-54 Identities = 134/148 (90%), Gaps = 9/148 (6%) Strand = Plus / Minus Query: 1 taaaatctaattcataaagttaaaaccttaacgactgccattcttaacaagcaacattca 60 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 302 taaaatctaattcataaagttaaaaccttaacaactgccattcttaacaagcaacattca 243 Query: 61 atcttgcatgtatatgtagatattaaatgtacatacacatgca-----a-acagagag-g 113 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| Sbjct: 242 atcttgcatgtatatgtagatatt-aatgtacatacacatgcacacacacacagagagag 184 Query: 114 -gggggggagagagagggagagagagag 140 \| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| Sbjct: 183 agagagagagagagagggagggagagag 156 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 12 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 148 Length of database: 547 Length adjustment: 8 Effective length of query: 140 Effective length of database: 539 Effective search space: 75460 Effective search space used: 75460 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no192_c21.g1 MSMg01no192_c21.g1 CHROMAT_FILE:
MSMg01no192_c21.g1 PHD_FILE: MSMg01no192_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:12 2005
         (148 letters)



>mm_chr9_89387851_89388397
          Length = 547

 Score =  194 bits (100), Expect = 3e-54
 Identities = 134/148 (90%), Gaps = 9/148 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaatctaattcataaagttaaaaccttaacgactgccattcttaacaagcaacattca 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 302 taaaatctaattcataaagttaaaaccttaacaactgccattcttaacaagcaacattca 243

                                                                       
Query: 61  atcttgcatgtatatgtagatattaaatgtacatacacatgca-----a-acagagag-g 113
           |||||||||||||||||||||||| ||||||||||||||||||     | |||||||| |
Sbjct: 242 atcttgcatgtatatgtagatatt-aatgtacatacacatgcacacacacacagagagag 184

                                       
Query: 114 -gggggggagagagagggagagagagag 140
            | | | ||||||||||||| |||||||
Sbjct: 183 agagagagagagagagggagggagagag 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 547
Length adjustment: 8
Effective length of query: 140
Effective length of database: 539
Effective search space:    75460
Effective search space used:    75460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information