BAC Information

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BAC

Clone NameMSMg01-192E18
Chromosome9 (Build37)
Map Location 76,000,241 - 76,000,624
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo5a, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1
Downstream geneGfral, Hcrtr2, C530008M07Rik, Tinag, LOC436082, 2310046A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192E18.T7 (MSMg01no192_e18.b1)MSMg01-192E18.TJ (MSMg01no192_e18.g1)
ACCAG382019AG382020
length1,3831,284
length of high quality
(start - end)
---385 (71 - 455)
definitionCHROMAT_FILE: MSMg01no192_e18.b1 PHD_FILE: MSMg01no192_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:28 2005CHROMAT_FILE: MSMg01no192_e18.g1 PHD_FILE: MSMg01no192_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGACATTCGGCGCAACGACTCCTAAGGGAGAGGATCCGCGGXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TTTTTTTTCCCCCCCCCCCCATGAGAAAAANTATTTTTTAAAAAAAAAAA
GGGGGGGTTATTTTNAATGTTTTATAAATTTTATTGTACGAATGTTTATT
ATATATTTTGGTTGAAAAAATATTTTTTTGAGAGAATTTTTATTATTGTT
GAAGATTTAAGGTTATTATATATTTTGTATTTGTAATATAATATTTTTAA
TAGTATTATTTTTATTTTTTGTTGAATATTTTTTTTTTTAATTTTATTTG
TAATAAATAATTTTTTTAGTAAATTTTTTTTTTATTTTAATTTTATTTAA
TTTTTTTTTTAATATGTTTTATTAAATATGATTATAGTATTTTTAGAAAT
TGTTTTTTTTTTTTATTTTTATTTTTTATTTTTTGATTTATTTATTTGTT
TTTTTTTATTTGATTTTTTTTGTATTAATTTTTATTTTTGTTATTTGATA
TTATATTTTTGTTTTTATTTATGTTTTTTTTATTTTATTTTGTTTTATGT
TTTATTTTTTTTTTATTTTTTTATTTAGTTTTTTTTTTGTTATATTTTTT
TTGTTATTTTTTTTTTTATTATAATTTTTTTTTTTTTTGTATTTTATTTT
TTTTTTTAATTTTATTTTTTTATATATTTTTATATATTTATTTTTTTTAT
TTTATTATTGATTTTTTTTATAATTTATTATATATTTATTTTTTTTTTTT
TTATATTTATTTTTTTTTTTGTATTTTTAATATATTTATATAATTTAATT
ATATTATATATTATTATATATTGTTTTTTTTTTGATTTTAATTATTATAT
TTTATTTATGTTTTTGTAATAATGATTATTTTGATTTGATTTATTTTATT
TTATTTAATTATATAGATTTATTAGTTTAATTTTAATATTTTATTGTATT
TATTATTTTAATTATTATTGTATAGTGGTTAAT
NNNCCTAGATGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGGTGAAGAATAGCTAAGGAGTCTGGTCT
GTGTCTGACAGCTGGTGCAAAGCACCTCGAATCAATAAAACTCTTATTAA
TTCTATCCTAAGTATTTGCTATTGGTTCATATGGACATGACTCTAAGGAA
AAAAAACTGTAGATTTGGGAGTTTCTAATGCAGGCTATTGTAGGAAAGAA
TGTTGACTATTTTCAGTGGCCTGTGCATTGATAGAAATAATGCCAACTAA
ATAAATAATTGCATACCAGAAATTTGTACATCAAGAATAGTTAAGACATT
TAAAGATATACTTTCTCTCCTTAAGTCATTTTCTAGAAAATACTTCATCA
GACTTTGAATTAAGGCTATGTAGCTCATGGTAGAAATGAGTTCTCAAATA
TTTTTTTTCCCTCCCCCATCTGACCTAGCCATCCATAAAAGAACTCCTTC
TCGACTGAGTCCTGCTGAGTCTATAGACTATTTTGCAGGTAAAAGTGCTC
TAAGAAAATGTATCTAGTTTTTCCTTTATTGACCCAAGAATAATATTTAA
GATTTTTCTCTGGTTTTTTTTCTGTCGTTCAGAACATAGTAACACAACAA
AAATTTTGCTAATTATTCACTGTTATTCACTAGTTTCCTCTATATTCTAT
TTTCTATTCACTAGACTCTATATTCTATTTTCCTGGGACTTGTGTTATAA
CCATTTTGTCTATTGTAGTGACTGTCCCTCACTGGAAAATCAACACTTTG
GCCAATATTTGAGAAAGGGTGGCCTTTATCTTTCTTTTACTGTGGGTTTC
TCACCTTATTTCCTATGATTTGGATAAGATCCCCTTGTCCTCCCAAGGGT
TCCTTGCTTTGAAATTCCACTTCACTTTTGTATAATTTTTTCTTTAAAAA
AAATTAAAATTGTTATTTTTTTGTTGTTTCTTAAGTGTGTTCTTTTTTTT
TCTTATATTTTTATTATATTTTTTTTTCCCTTATCTTTCTCATATCTCTC
TTGTATTTTTCTTTTATTATTCCATTTTTCTCCTCTCTTTTTCTTTCCTC
TCTTTTTTCTCTTTTTATCTTCTTTCTATATTGATTTCTTTTCTCCTTTT
TACTCTTATAATAATATATTTGTTATTATCTTAATTTCTACCTATTTTTT
ATTTANTACTCTTCTCTTCTCTTCTTTTTCATTATGTTTCTTTCTCTATT
CTTCCACTCTAATTGCTTATCCCTTATATTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_e18.g1 MSMg01no192_e18.g1 CHROMAT_FILE:
MSMg01no192_e18.g1 PHD_FILE: MSMg01no192_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:28 2005
         (385 letters)



>mm_chr9_76000041_76000826
          Length = 786

 Score =  727 bits (376), Expect = 0.0
 Identities = 382/384 (99%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtgaagaatagctaaggagtctggtctgtgtctgacagctggtgcaaagcacctcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agggtgaagaatagctaaggagtctggtctgtgtctgacagctggtgcaaagcacctcga 525

                                                                       
Query: 61  atcaataaaactcttattaattctatcctaagtatttgctattggttcatatggacatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atcaataaaactcttattaattctatcctaagtatttgctattggttcatatggacatga 465

                                                                       
Query: 121 ctctaagg-aaaaaaaactgtagatttgggagtttctaatgcaggctattgtaggaaaga 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctctaaggaaaaaaaaactgtagatttgggagtttctaatgcaggctattgtaggaaaga 405

                                                                       
Query: 180 atgttgactattttcagtggcctgtgcattgatagaaataatgccaactaaataaataat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atgttgactattttcagtggcctgtgcattgatagaaataatgccaactaaataaataat 345

                                                                       
Query: 240 tgcataccagaaatttgtacatcaagaatagttaagacatttaaagatatactttctctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgcataccagaaatttgtacatcaagaatagttaagacatttaaagatatactttctctc 285

                                                                       
Query: 300 cttaagtcattttctagaaaatacttcatcagactttgaattaaggctatgtagctcatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 284 cttaagtcattttctagaaaatacttcatcagactttgaattaaggctatgtagcccatg 225

                                   
Query: 360 gtagaaatgagttctcaaatattt 383
           ||||||||||||||||||||||||
Sbjct: 224 gtagaaatgagttctcaaatattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 786
Length adjustment: 9
Effective length of query: 376
Effective length of database: 777
Effective search space:   292152
Effective search space used:   292152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)