BAC Information

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BAC

Clone NameMSMg01-192H02
Chromosome9 (Build37)
Map Location 101,453,571 - 101,453,928
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
Downstream geneEphb1, 9630041A04Rik, Ky, LOC664843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192H02.T7 (MSMg01no192_h02.b1)MSMg01-192H02.TJ (MSMg01no192_h02.g1)
ACCAG382117AG382118
length1,208623
length of high quality
(start - end)
420 (28 - 447)---
definitionCHROMAT_FILE: MSMg01no192_h02.b1 PHD_FILE: MSMg01no192_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:48 2005CHROMAT_FILE: MSMg01no192_h02.g1 PHD_FILE: MSMg01no192_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAGCTATGGGCGCTATAGACTCCATAGGGAGAGGATCCGCGGAATTCT
CTTCCCATCTTTATTAGTGAATTCCGGAAGCAGCCTTATTTGGCTCTGAG
CTGAGGGACAGTTCAGAGGTACCAATGGGACAGCTGTAGCCTGGTGACAC
TCTGGTCCAGTGGAGCCTTGGAGAGTGCTAGAGAAATCTTGACCTACAGA
TGCACTTGAGGTGGTGTTGCACGGTAGGGGGCAGCAACTGCTTTTTCTCA
CAGAAAAATCCTCGAAATCATTCTTGCTCAGAGGAGGACCACAGAGGCCA
CTGCATCCTAGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCAGCACTGTTGTG
GCTCAATGTGTAATTGTAAGGCTGCCCAAGCTTGAGGTCACCTGAATTTT
TTTTTGCCCCCCGCTGAGTGTGGGAAGCCTGACGTCTTGAAAATGTTTTC
CCATTCTTCATTTTTCTATCTTCTCCCATTTCCCTCCTCACTATAGTGCT
GATTTCTAAGGAGGCTAATGTTTTTAGTGAGAAGAACTATGAACAGCAAA
AGCAAGGCCAGCTGCTCACTCAGATATGGCCTTCTGGACAAAGGCTATTG
GCCAAGAGAATACATTTGAGGGTCCCAGATATCCCTAGAGGGATGAGAGA
GCTTCTGTCCAAACCAAAACAGGTCATGATTTCCCACTGCATCCTCTGGA
CACAAAAAGGAGGGGTGGGGAGAAAGAGGGAGTTAAACTTTCCTCTTCTT
TTCTCTATTCTTCTCCTCTTATTTTTTCCCTACTTCTTTTCTTTTCTTTA
TCTTCTTCATCTTTTCCTCTTTTCATCTATATCCTTTTTTCTCTTATTTT
TCTTTTCTCTTCCTTCTCTTTCCTATATTTTTTATCTTCTTTACTTTCTT
TCCTTCCTTTCTCTCCTTCCTACTACTTTCTTTCCTCCCTCTTCCCCTTC
TTTTTCTTTTCTCTTATCTTTCCCTCCTTTTCTCCCTCTTCTTCCCTTTT
TTCTAAATTCTCTTTCTACTTTCTTCTTCATTTCTTCTTTTTTCCTTCTC
TTACTTTTTCTTGACTTTTTTACTTTACTCTCTCTCTCCCTCTCTACATT
CTTTTTCCTTCTCTCTATTCTTTTTTTCTTCTTTTTCCTATCCTTCTTCT
CTTTTTTG
AGAGTGGGTGGGATAGGATTAGGTGGCCTAGGCNNNNGNNNNNNNNCTTT
AGGNNNNNGGGGGNNGNNNNNNGNNNGNNNGGGTTTAAGGGGNNNNNNNN
NNGGGGGGNGNGGNNNNNNNGNNNNGGGNGGGGGGGGGGGGGGGGGGGGG
GGNGGGGTTTTGGNNNNGGGGNNNGGGGGGGNGGGNGNGGGTTTTTTGGG
GGGNGGGNGGGGGGGAAANGTTTTTCCCCCCNNNNNNNAAAAAAGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_h02.b1 MSMg01no192_h02.b1 CHROMAT_FILE:
MSMg01no192_h02.b1 PHD_FILE: MSMg01no192_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:48 2005
         (420 letters)



>mm_chr9_101453355_101454174
          Length = 820

 Score =  578 bits (299), Expect = e-169
 Identities = 355/403 (88%), Gaps = 45/403 (11%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctcttcccatctttattagtgaattccggaagcagccttatttggctctgagctg 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctcttcccatctttattagtgaattccggaagcagccttatttggctctgagctg 276

                                                                       
Query: 77  agggacagttcagaggtaccaatgggacagctgtagcctggtgacactctggtccagtgg 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agggacagttcagaggtaccaatgggacagctgtagcctggtgacactctggtccagtgg 336

                                                                       
Query: 137 agccttggagagtgctagagaaatcttgacctacagatgcacttgaggtggtgttgcacg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agccttggagagtgctagagaaatcttgacctacagatgcacttgaggtggtgttgcacg 396

                                                                       
Query: 197 gtagggggcagcaactgctttttctcacagaaaaatcctcgaaatcattcttgctcagag 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtagggggcagcaactgctttttctcacagaaaaatcctcgaaatcattcttgctcagag 456

                                                                       
Query: 257 gaggaccacagaggccactgcatcctaggaagcagcagcagcagcagcagcagcagcagc 316
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 457 gaggaccacaggggccactgcatcctaggaagcagcagcagcagcagcagcagca----- 511

                                                                       
Query: 317 agcagcagcagcagcagcagcagcaacagcagcagcagcaacagcagcactgttgtggct 376
                                                   |||||||||||| |||||||
Sbjct: 512 ----------------------------------------acagcagcactgctgtggct 531

                                                      
Query: 377 caatgtgtaattgtaaggctgcccaagcttgaggtcacctgaa 419
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 532 caatgtgtaattgtaaggctgcccaagtttgaggtcacctgaa 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)