Query= MSMg01no194_k17.b1 MSMg01no194_k17.b1 CHROMAT_FILE:
MSMg01no194_k17.b1 PHD_FILE: MSMg01no194_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:36 2005
(672 letters)
>mm_chr9_93144963_93146037
Length = 1075
Score = 1191 bits (616), Expect = 0.0
Identities = 636/644 (98%), Gaps = 3/644 (0%)
Strand = Plus / Minus
Query: 1 ataatactgatgatggcagatctgctcattttggtctag---tttttttttctttttctc 57
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 644 ataatactgatgatggcagatctgctcattttggtctagttttttttttttctttttctc 585
Query: 58 ctgagatatttctaacctttgtatcatgtatcattccaataaattgccacatgtctcttg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctgagatatttctaacctttgtatcatgtatcattccaataaattgccacatgtctcttg 525
Query: 118 ggtggaatctgttaaatataaaataatcataatttctccttatatatatatatatagaac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggtggaatctgttaaatataaaataatcataatttctccttatatatatatatatagaac 465
Query: 178 gagaaaatgctgtatttttctttatcatcatggctgttcaatatcatgagaagaaatgtt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gagaaaatgctgtatttttctttatcatcatggctgttcaatatcatgagaagaaatgtt 405
Query: 238 aatggttgttccatattttacaagtatgaaaagggtaatattaggaatgggggttaatac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatggttgttccatattttacaagtatgaaaagggtaatattaggaatgggggttaatac 345
Query: 298 tatgacttaaaaaaggatcctggatattgacttttgaaagaattagaacaccttacagta 357
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 344 tatgacttaaaaaaggatcctggatattgacttttgaaagaattagaatagtttacagta 285
Query: 358 ttttagtattaatttttcctgaaacacaaatgctcttgaaagttttaaaacttagagaca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttttagtattaatttttcctgaaacacaaatgctcttgaaagttttaaaacttagagaca 225
Query: 418 agctatttgggttattaaaaatgcaaatttatttttaaaaagaaaagaattgaaataaaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agctatttgggttattaaaaatgcaaatttatttttaaaaagaaaagaattgaaataaaa 165
Query: 478 taatattcatatactatgttttaacaaagttcccatgtacattaaagagtttttaaaaaa 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 taatattcatatactatattttaacaaagttcccatgtacattaaagagtttttaaaaaa 105
Query: 538 taaaaccaaataaatacaataagataaaataaaaaaaaacatcatggggcagtctgctat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 104 taaaaccaaataaatacaataagataaaataaaaaaaaacatcatggggcagtctactat 45
Query: 598 gcacagtggacctctattctacttcaatgcctccacacaccttc 641
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 gcacagtggacctctattctacttcaatgcctccacacaccttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1075
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1065
Effective search space: 705030
Effective search space used: 705030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_k17.g1 MSMg01no194_k17.g1 CHROMAT_FILE:
MSMg01no194_k17.g1 PHD_FILE: MSMg01no194_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:37 2005
(663 letters)
>mm_chr9_93022016_93023078
Length = 1063
Score = 1228 bits (635), Expect = 0.0
Identities = 656/663 (98%)
Strand = Plus / Plus
Query: 1 acagaacccagagtgggctatcttgctcttgctgagtaattgtgaagaggagcatacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaacccagagtgggctatcttgctcttgctgagtaattgtgaagaggagcatacctg 260
Query: 61 gctattgccaggtaactgtgggggtggagtctggacagcctacctgattgatggccaccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctattgccaggtaactgtgggggtggagtctggacagcctacctgattgatggccaccg 320
Query: 121 aatgatggagttgagggttcgtggtgtcagtcatttgtttctgggggtgtagctcactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgatggagttgagggttcgtggtgtcagtcatttgtttctgggggtgtagctcactgt 380
Query: 181 tccttcccatgtaggattttctactaggtttccagagtatgtcttgctcgaccacaacac 240
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct: 381 tccttcccatgtaggattttctactaggtttccagagtaagttttgctagaccacaacac 440
Query: 241 agactgactttcacaaccccacagacacagagagagatggccatgtgagcatcgggtcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactgactttcacaaccccacagacacagagagagatggccatgtgagcatcgggtcaa 500
Query: 301 agcatccagagaccctctcatccaggcatactgaagggctagaaccaatgaccaccatac 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 agcatccagagaccctctcatccaggcatactgaagggctagaagcaatgaccaccatac 560
Query: 361 ccacagaacacatgagattctaaatacacttatccaaaagatggacactagatattggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacagaacacatgagattctaaatacacttatccaaaagatggacactagatattggag 620
Query: 421 aaaccatccatttggtctgattggaacggaaaacacattctgcaccatgaagaaaaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccatccatttggtctgattggaacggaaaacacattctgcaccatgaagaaaaagaa 680
Query: 481 aaaacatttttcaaaggaaagtatgtacaggagtgcagtaggcaacccgaagcagttccc 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatatttttcaaaggaaagtatgtacaggagtgcagtaggcaacccgaagcagttccc 740
Query: 541 tgctgacccaactgcaaaagcagctgcaaagaaataagagcattgttgattagctcagaa 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctgacccaactgcaaaagcagcggcaaagaaataagagcattgttgattagctcagaa 800
Query: 601 tatcaaatcagcatctgaaagttccccgaataaaagtgatccttatggcatagtaagggt 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 801 tatcaaatcagcatctgaaagttccccgaataaaagtgatccttatggcttagtaagggt 860
Query: 661 agc 663
|||
Sbjct: 861 agc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
