BAC Information

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BAC

Clone NameMSMg01-194M23
Chromosome9 (Build37)
Map Location 45,457,055 - 45,457,725
singlet/doubletsinglet
Overlap geneDscaml1
Upstream geneLOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2
Downstream geneCep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194M23.T7 (MSMg01no194_m23.b1)MSMg01-194M23.TJ (MSMg01no194_m23.g1)
ACCAG383589AG383590
length735909
length of high quality
(start - end)		673 (45 - 717)---
definitionCHROMAT_FILE: MSMg01no194_m23.b1 PHD_FILE: MSMg01no194_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:48 2005CHROMAT_FILE: MSMg01no194_m23.g1 PHD_FILE: MSMg01no194_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTCCAGCACGCTGCGGGTCGTGAGTGACAGTATCACTGATGGAA
CAATCAAAGTCTGGCCCTAGGACAAGTGCTTTAACTCAGGACCACTCTAA
CCTCTGACTGATACTGACACCAACACAATTAGGGCTAAGGAAACGAGTCC
AAGGGGTCAGGCGCCTGTGTGAGGTCACACAATGGAGCAAAAGTCCATTC
AACTTCAGCACCAAAGCCAGACTTGCCAGAGAGCAAAGAGGCCACGATTC
CTGTGCTCACTCAGCCGTTCATCCTTTGATCCACAAAAGCAGGATGACCA
CAGCTGAGGCCAGGACAGAGATGGGAGACAGCCCCGCCTGCCCTGTGGAG
TCCGCAGTCATTCATCGATACACATCAGGCTTTACCGGACGCTCAGCTGG
GGCTATACCGGGAACGAGGAGGCAGAGACACATGAATAGCTCTTCCTGCC
CTTTAGAGACTGCCCTACCCAATGTCACTGTTCCTCTCTGCAGTGTGGAG
ACAGGGGAGGCTGTGAGGCTATGAGACAGGTGGAGAAACAGATATTATAA
GGACAGAGAGGTGGGAGGTCTCCCTGCCCCATAGTACCTTGGAACAACAC
AGGGACTGGGTTAGATAGCTTTAAATGGCTGCCGTGTTGATTTTCTCTTA
GCTGCACCCCCTCTGGAGCATAGTCAAAGCAGTGT

NNNNNCCCCTCTTGCCTTTTNNCCAACATAACCTCCAACACCTTATTCCA
ACATTAGAGAGGGAGGGGAAGCCGGGATCCTTACCAGCTGGAGGGAGAGG
AGTTTTCAAAAACGGGGGGTGAGAAGAAAGAGAGATGGGAATTCAGAGTT
TGGTGTGTTTCCCCGCGCTGTCTCTTCGGTAGAGGCAGATCTCAGTAAGA
TAACGACACAACATAAAATATCGCTTCCTATCTTCAGCGCTATGTGTTAG
GCGGCAGTACTAATGCTTCTCTATGTAGTATATTGTCCTTTACAGTCTTT
TAAGTGATGATAAATTTGCTTGATGATCTTAGAGTTTTGGTAAGCCAGAG
GTGGCTCGGAGCAGAATTTTTTTTTTTTCTTCTATATTTGATGTTTGGAG
GAAGTTCGAGGTTTTTGTTACCCCCCCCTCATGACGTTTGATGTGTAGTA
CCTTTTGTTAGTACTATGTTTTGATTGTGGGCCCCCCCCCGGGGGGTCCT
TTGCATAACCTGTATCGGTTCGGGCTTGTCGTTCTCGGTCTTTGCATGCT
TTCCTGTATTTATTTCTTTACTTCACCTCCATGCTGCGCTACTTTTTTTT
CTTCCTAATTCTATCAGGTGTATTGACATCTGGGTGCGTGCTCTACCGTC
ACTTCTATACATACATGTGTCTCTTGACATGATGATATAGCAATCAGTTA
TACGGCGTGATTTATAAACTTCGTCTGTCTCTACTTTTCTGTGCGATACT
GTACTATTCTTTCTCCTCGTATATGAGAGACCGATTTTGGAACATCTAGA
GAAAACATAGAGCGTGAATGAGTTGTGAGCTTTAAGGGGCGTGCGCTCAT
ATTTAATACTTAGTTTAGACTAGACTTATAGCTGGTCTTCTCAAGAGTAT
CTCACATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_m23.b1 MSMg01no194_m23.b1 CHROMAT_FILE:
MSMg01no194_m23.b1 PHD_FILE: MSMg01no194_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:48 2005
         (673 letters)



>mm_chr9_45456852_45457925
          Length = 1074

 Score = 1259 bits (651), Expect = 0.0
 Identities = 666/671 (99%), Gaps = 1/671 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctttccagcacgctgcgggtcgtgagtgacagtatcactgatggaacaatcaa 63
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttccagcaagctgcaggtcgtgagtgacagtatcactgatggaacaatcaa 263

                                                                       
Query: 64  agtctggccctaggacaagtgctttaactcaggaccactctaacctctgactgatactga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtctggccctaggacaagtgctttaactcaggaccactctaacctctgactgatactga 323

                                                                       
Query: 124 caccaacacaattagggctaaggaaacgagtccaaggggtcaggcgcctgtgtgaggtca 183
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taccaacacaattagggataaggaaacgagtccaaggggtcaggcgcctgtgtgaggtca 383

                                                                       
Query: 184 cacaatggagcaaaagtccattcaacttcagcaccaaagccagacttgccagagagcaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacaatggagcaaaagtccattcaacttcagcaccaaagccagacttgccagagagcaaa 443

                                                                       
Query: 244 gaggccacgattcctgtgctcactcagccgttcatcctttgatccacaaaagcaggatga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaggccacgattcctgtgctcactcagccgttcatcctttgatccacaaaagcaggatga 503

                                                                       
Query: 304 ccacagctgaggccaggacagagatgggagacagccccgcctgccctgtggagtccgcag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccacagctgaggccaggacagagatgggagacagccccgcctgccctgtggagtccgcag 563

                                                                       
Query: 364 tcattcatcgata-cacatcaggctttaccggacgctcagctggggctataccgggaacg 422
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcattcatcgataacacatcaggctttaccggacgctcagctggggctataccgggaacg 623

                                                                       
Query: 423 aggaggcagagacacatgaatagctcttcctgccctttagagactgccctacccaatgtc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggaggcagagacacatgaatagctcttcctgccctttagagactgccctacccaatgtc 683

                                                                       
Query: 483 actgttcctctctgcagtgtggagacaggggaggctgtgaggctatgagacaggtggaga 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actgttcctctctgcagtgtggagacaggggaggctgtgaggctatgagacaggtggaga 743

                                                                       
Query: 543 aacagatattataaggacagagaggtgggaggtctccctgccccatagtaccttggaaca 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aacagatattataaggacagagaggtgggaggtctccctgccccatagtaccttggaaca 803

                                                                       
Query: 603 acacagggactgggttagatagctttaaatggctgccgtgttgattttctcttagctgca 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acacagggactgggttagatagctttaaatggctgccgtgttgattttctcttagctgca 863

                      
Query: 663 ccccctctgga 673
           |||||||||||
Sbjct: 864 ccccctctgga 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space:   705432
Effective search space used:   705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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