BAC Information

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BAC

Clone NameMSMg01-195J14
Chromosome9 (Build37)
Map Location 23,424,683 - 23,533,317
singlet/doubletdoublet
Overlap geneLOC100040866
Upstream geneBbs9, Bmper
Downstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195J14.T7 (MSMg01no195_j14.b1)MSMg01-195J14.TJ (MSMg01no195_j14.g1)
ACCAG384056AG384057
length761751
length of high quality
(start - end)
281 (52 - 332)328 (80 - 407)
definitionCHROMAT_FILE: MSMg01no195_j14.b1 PHD_FILE: MSMg01no195_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:52 2005CHROMAT_FILE: MSMg01no195_j14.g1 PHD_FILE: MSMg01no195_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,424,683 - 23,424,959)(23,532,990 - 23,533,317)
sequence
CCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCCAAAATTGACCACAAAGTCTATGTGTGCATGTGTGTG
TGCGTGTACGCGCTGGGATATGTATGTATGTTGATTTTGATTTTATAATA
AAATAGCTATGTCAAGGGAGCTTTATAAAGTTTATTTAGCTCAGTTTTGG
AGTCAGAAAGCCGTTAGACTCTGAAGGTGAGGGGTTGTAACAGTGGATGG
CATTATGACTGGGATGTATATGGAAGTGAGAGTTCACACAATACAGAATG
CTGGAATACAAATCAGAAGTCATGATCACTCTTGTAACAAATGCTTTTTT
ATATGCAATTTTCGTGCAAGCTTCAGATCTAAGGATGACCTTATTCTCCA
CTAAGAGCCATGTCCACAGTGAGCCTTATGTCACTTTCCCTAGGTTTTTC
TTTTAAACTTCCCACCATCTATCATGATACTGTTTTGGGGACCAAGTCTG
CAATACTGGTACTTTGGTTCGACCTTTAATACACTACATCCATGTTCGGT
TTTCGTTATTCCTATGTCTCTCACTAAAATGGCCATATTCTCCTCTTAGT
TCATCCGCCAATCGCTCTAAAATAACCAATTAGATACTGCCCATTATCCG
TAGTATTACCTTTACTAATCACTATTATCATTATTTACTGCCACGAAAAC
TTAACTTCTTTTCCCTTGCTGACTCTCTTTTTACCGCTCAAGTTATCTTT
TTCGCACCCCC
TTTTACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGTCACAGCCCTGAGGCA
GTTTGAAATACAACTGTATTTAGTAATGTGGATTCAGAAGACTTTAGACG
CATGTTAGAAGGTCAACTCATTTAAGGTCTTCTCTTCTCACAAAGTTCAA
CAACATTTAGAGTTTGTTCTTATGTTCATTTAAATGGAACTACGACTATA
GAGACAGAACATTTTAATTGAATTGATAATTACTAATGTCCATTTGAAAT
TATCATGGAAATATAAACTTATAAGTTATTGTGGATTTCTAGGGTGAAAC
TGAGTAGACTTTCAAAACAGAAAATAAGGCTCATATGTCTCAATACACAT
CATCCAGTAACCCTTAGCAGTAATTTAAATGGTTTCCTAGGGTAAAGCAT
GTGTCAACTAAGAACTCTGGGACAATGAAAATCTATTAACCTGGCAAGGC
GATGTCACCTTTTCTTTAACTCTTTTATGTAGCTATTAGTGATGACTACT
ATGCAAATCCACAATGAACAAGAAAAAAATTGATAAAAAGAAATACTAGA
TGTCCAGTTTTTAGGGGAAAAGAAAATCATGATAATTTAATAATCCTTAG
AATATACTACAAAAGATAATGCGTAATGGCATTAAAGTAAGGTGTGTCTT
CATTTAAAAGATAATCCCACTTACCCCTTCAACCTTGTCACCAGATATGG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_j14.b1 MSMg01no195_j14.b1 CHROMAT_FILE:
MSMg01no195_j14.b1 PHD_FILE: MSMg01no195_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:52 2005
         (281 letters)



>mm_chr9_23424479_23425159
          Length = 681

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccaaaattgaccacaaagtctatgtgtgcatgtgtgtgtgcgtgtacgcgctg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 205 gaattccccaaaattgaccacaaagtctatgtgtgcatgtgtgtgtgcgtgtgcgtgctg 264

                                                                       
Query: 65  ggatatgtatgtatgttgattttgattttataataaaatagctatgtcaagggagcttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatatgtatgtatgttgattttgattttataataaaatagctatgtcaagggagcttta 324

                                                                       
Query: 125 taaagtttatttagctcagttttggagtcagaaagccgttagactctgaaggtgaggggt 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 taaagtttatttagctcagttttggagtcagaaagctgttagactctgaaggtgaggggt 384

                                                                       
Query: 185 tgtaacagtggatggcattatgactgggatgtatatggaagtgagagttcacacaataca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaacagtggatggcattatgactgggatgtatatggaagtgagagttcacacaataca 444

                                                
Query: 245 gaatgctggaatacaaatcagaagtcatgatcactct 281
           ||||||||||||||||| |||||||||||||||||||
Sbjct: 445 gaatgctggaatacaaaccagaagtcatgatcactct 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no195_j14.g1 MSMg01no195_j14.g1 CHROMAT_FILE:
MSMg01no195_j14.g1 PHD_FILE: MSMg01no195_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:52 2005
         (328 letters)



>mm_chr9_23532790_23533517
          Length = 728

 Score =  611 bits (316), Expect = e-179
 Identities = 325/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagtcacagccctgaggcagtttgaaatacaactgtatttagtaatgtggattcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cttagtcacagccctgaggcagtttgaaatacaactgtatttagtaatgtggattcagaa 469

                                                                       
Query: 61  gactttagacgcatgttagaaggtcaactcatttaaggtcttctcttctcacaaagttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gactttagacgcatgttagaaggtcaactcatttaaggtcttctcttctcacaaagttca 409

                                                                       
Query: 121 acaacatttagagtttgttcttatgttcatttaaatggaactacgactatagagacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acaacatttagagtttgttcttatgttcatttaaatggaactacgactatagagacagaa 349

                                                                       
Query: 181 cattttaattgaattgataattactaatgtccatttgaaattatcatggaaatataaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cattttaattgaattgataattactaatgtccatttgaaattatcatggaaatataaact 289

                                                                       
Query: 241 tataagttattgtggatttctagggtgaaactgagtagactttcaaaacagaaaataagg 300
           |||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tataagttaaagtggatttccagggtgaaactgagtagactttcaaaacagaaaataagg 229

                                       
Query: 301 ctcatatgtctcaatacacatcatccag 328
           ||||||||||||||||||||||||||||
Sbjct: 228 ctcatatgtctcaatacacatcatccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)