BAC Information

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BAC

Clone NameMSMg01-195J19
Chromosome9 (Build37)
Map Location 13,957,625 - 13,958,114
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
Downstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195J19.T7 (MSMg01no195_j19.b1)MSMg01-195J19.TJ (MSMg01no195_j19.g1)
ACCAG384062AG384063
length746745
length of high quality
(start - end)
657 (40 - 696)562 (70 - 631)
definitionCHROMAT_FILE: MSMg01no195_j19.b1 PHD_FILE: MSMg01no195_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:53 2005CHROMAT_FILE: MSMg01no195_j19.g1 PHD_FILE: MSMg01no195_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AACTATCCCTCTCTTGTCACTAAATGAAGCACTGCTTGTGTCACCAAGAA
CCTGAGACTAGACAGCCCAGGAACATAGGGTAAAACAAAATACTAGATAC
TAGATCTTTGTTCTAGATAAAGAACAAAGCAGTAGTATAGCCCTCAATGA
CATTCTGCTATACTCATAACTCTGGCCTTGCCCAAGCGTCCTCAGAGAGG
CTTCTTCCTAGAGAAGAAGGGAAAATCAGAGACCCACAGCCACACACCAT
CCAAAGAGTGGGAGACTGTGGAACACTCATGCTTTAACAGCACATCTCCA
TCAAATTCCTCCCCTCAGGGCTGTGGTAGAGGGGGTAGAAAGAGTGTAAG
GGACAGAGATAATGGAGGACACCAAGAAATGAGGCCCTCTAAATCAACAG
AATCCACGTACATATAAGCTCACAAAGATAGAAGCAGCGTGCATGAGGCC
TGCATGGCTCTGGGCCACGTGGGGTCTTAGAACTGAAAGGAGAAGTGGAC
ACATGGCGTCATCACTAACCCAGAAGTTATCAACCCATTTGATAACCACT
TGCAATTTAGTTTCCTCCAAGGAAGTCTCACTAGGGAAACTAATTATGAC
TAAGGTGGCTGCGTGTCCAGCAGTAAATGCCAACAGAAAATGAACTCAGT
GGTAACAGTTGAGGTTCCTTGTCCCACAACGTCTCATCAGGGTGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAAGCGTAGCAGTGGTGTCCACGAGGGGC
CTATACCATGGCAGAAGGTGGAGGATAAGTGGCTGGTGTAAGAGCTGGAG
GGTGAGATTCGGCTCCCTTTCACAGTCTCCTACTCCAATAACCAACATAT
TCTCAGGGTTCTGAGGTTAAGCCAATCTTGAGGGCTCAGTTGTGACCGTC
ACCGTGGCACTGCAATTCCACATGAACTTTATAGATCTGTGGAGTAAAGG
GGTTGCCACAATAAATCATCCTAGTGTCTGTTCCACCACCACATCTATGA
CCTTCTTTGCAGTCATTCAACAAACCCTTGCTGAATTTCTCTGTGTGCTT
ACATGCTCTACACACTGGGATTCAGGGCAGACATAGCCACTGTCCTGTTA
ACGCTTATGTTCTACCTGGGAAACATTAAAACTAATAGGATCCTATATTA
GAATCAGTACTCATGTGACAGAAGCAAAGCTGGCTAAAGTTTTTATTCCT
TACCTCCCTCTCTAGATTTAACAAATCTGGCTTCTATTCCCAGCCCTGCA
GATGTCCCCACTCCTCAGATGCTCTGTTGTTCTGTGCAACCCAGAGAAAG
TTCTACCATAGTCATATTGGGGGGGGGTGTTTAATGAGCGCACCTTCCCT
TCATTTTCTATTCACCCTCTCTATCCATTTTTTTTCCCCCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_j19.g1 MSMg01no195_j19.g1 CHROMAT_FILE:
MSMg01no195_j19.g1 PHD_FILE: MSMg01no195_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:53 2005
         (562 letters)



>mm_chr9_13957625_13958586
          Length = 962

 Score =  886 bits (458), Expect = 0.0
 Identities = 482/490 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagcgtagcagtggtgtccacgaggggcctataccatggcagaaggtggaggataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagaagcgtagcagtggtgtccacgaggggcctataccatggcagaaggtggaggataag 431

                                                                       
Query: 61  tggctggtgtaagagctggagggtgagattcggctccctttcacagtctcctactccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tggctggtgtaagagctggagggtgagattcggctccctttcacagtctcctactccaat 371

                                                                       
Query: 121 aaccaacatattctcagggttctgaggttaagccaatcttgagggctcagttgtgaccgt 180
           ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 370 aaccaacatattcccagggttctgaggttaagccaatcttgagggctcagctgtgaccat 311

                                                                       
Query: 181 caccgtggcactgcaattccacatgaactttatagatctgtggagtaaaggggttgccac 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 310 caccgtggcactgcaattccacatgaactttataggtctgtggagtaaaggggttgccac 251

                                                                       
Query: 241 aataaatcatcctagtgtctgttccaccaccacatctatgaccttctttgcagtcattca 300
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 250 aacaaatcatcctagtgtctgtcccaccaccacatctatgaccttctttgcagtcattca 191

                                                                       
Query: 301 acaaacccttgctgaatttctctgtgtgcttacatgctctacacactgggattcagggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 acaaacccttgctgaatttctctgtgtgcttacatgctctacacactgggattcagggca 131

                                                                       
Query: 361 gacatagccactgtcctgttaacgcttatgttctacctgggaaacattaaaactaatagg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 130 gacatagccactgtcctgttaacgcttatgttctacctgggaaacattaaaactaacagg 71

                                                                       
Query: 421 atcctatattagaatcagtactcatgtgacagaagcaaagctggctaaagtttttattcc 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 70  atcctatattagaatcagtactcatgtgacagaaacaaagctggctaaagtttttattcc 11

                     
Query: 481 ttacctccct 490
           ||||||||||
Sbjct: 10  ttacctccct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)