BAC Information

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BAC

Clone NameMSMg01-195K19
Chromosome9 (Build37)
Map Location 78,208,235 - 78,208,521
singlet/doubletsinglet
Overlap genenone
Upstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2
Downstream geneDppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195K19.T7 (MSMg01no195_k19.b1)MSMg01-195K19.TJ (MSMg01no195_k19.g1)
ACCAG384098AG384099
length725714
length of high quality
(start - end)
316 (45 - 360)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no195_k19.b1 PHD_FILE: MSMg01no195_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:58 2005CHROMAT_FILE: MSMg01no195_k19.g1 PHD_FILE: MSMg01no195_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCTTAAAGAATAGCCCCGCTGGCCATCTATCCCTTGCTTCAGGGA
AGATGAGCGGGGATGAGAGCCCTGGGATGTATGCTTGTTATAGTGTGTGT
TTTTTGTGTTTGGCACATGTGTTAGGTGCAGAGTGTGCAGGCCCACACTT
TTGCCATGGTAGCGTAGGCTTTTGCTGCAGTGGAGGCAGGACAATCTCCT
CAGATTCAGTTTGCCACTCTAGAAGAAATTATGCTGCGTTATGCCGTGGG
GTGCGAGGCTAAGCACTGCACATAGGATAGCTTGCTGTTGGCATCCTGTG
GAAGGCACTTCNGTTCGCCTGAGGCTNAGCGCCCTAGTTCCCTTCCCCCA
GGAAAAACGACACGGGAGCTGAACAAAAAAACTCTGGGTGATGAGCCTAA
GGGATGGTTTTGTGTAGGGCCCCTATGCTTGCACACTGGGGATCAGACCT
CTACCTTCACCCATGAGGCTTGCTTGCAGCAATTAAGATCTGGCCATAAA
TTAATTAACATCCTGGCCTTTTGATGCACCTGCCGCAAGCAAAACACAAT
CTCCCCAGGAGTGGCTTGGCATGATAGAGAGGTAGTCCGTGATAACAACT
CCCTGGGCATGTCTCCCAACCTTATACAGTGATCATACTCTTGCTGTTTT
GACCCCCAAGAACCGCTTACGTCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACACCTGTAAAGACAAAAGGT
CCGAATACCCAATGGCCCTTCAAAAAGAGCTAATTAAATGGAATATCTGA
CATGGGGAAAGAGGAACATATTATACATTTATAACTGGAACTCTGTTATA
ACTGAAACTCTGGCTGGGTGGTGGGTCATGCCTATAATCCCAACAACCTG
GAGACTAAGGAGAGAGGGTTGCCACAAGTTCAAGGCCAGACTGGGCTACA
TAACAATGAGACCCTGTCTCAAAAACCAAACAGTGTCAGCAAGATGGCTC
AGCTTGCAGCCAGTTTTTGTCGACCCGCCCCCCACCCCCTGAACCTTCAG
ATGAAAGGAGAGGTCCAACTCCAGCAAGATGACCTCTGATCCCTACCTTC
TCCAGAGAGGGAGAGGGGTATACCGAGAGGGGGAGGGGGAGGAGAGTNNT
NNNNNNNNNNNNNNNNNNNNNTNNNTNNNNNNNNNNTTNTNTTTTTNTTT
NTTTNTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTT
NNTTTTTTTTTTTGNTGTTTTTTTTTTGTTTTTTTTTTTTTTGTTTTTTT
GTTGTTGTTATTTTCATGTTTTTTTCTTTTCGTTTGTCGCTTTTTTTCCT
ATTTCTATTACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_k19.g1 MSMg01no195_k19.g1 CHROMAT_FILE:
MSMg01no195_k19.g1 PHD_FILE: MSMg01no195_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:58 2005
         (288 letters)



>mm_chr9_78208035_78208722
          Length = 688

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacacctgtaaagacaaaaggtccgaatacccaatggcccttcaaaaagagctaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacacctgtaaagacaaaaggtccgaatacccaatggcccttcaaaaagagctaatta 260

                                                                       
Query: 61  aatggaatatctgacatggggaaagaggaacatattatacatttataactggaactctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggaatatctgacatggggaaagaggaacatattatacatttataactggaactctgt 320

                                                                       
Query: 121 tataactgaaactctggctgggtggtgggtcatgcctataatcccaacaacctggagact 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataactgaaactctggctggttggtgggtcatgcctataatcccaacaacctggagact 380

                                                                       
Query: 181 aaggagagagggttgccacaagttcaaggccagactgggctacataacaatgagaccctg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 aaggagagagggttgccacaagttcaaggccagactggtctacataacaatgagaccctg 440

                                                          
Query: 241 tctcaaaaaccaaacagtgtcagcaagatggctcagcttgcagccag 287
           ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tctcaaaaaccaaacagggtcagcaagatggctcagcttgcagccag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)