Query= MSMg01no195_l20.b1 MSMg01no195_l20.b1 CHROMAT_FILE:
MSMg01no195_l20.b1 PHD_FILE: MSMg01no195_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:02 2005
(664 letters)
>mm_chr9_71202988_71204051
Length = 1064
Score = 1214 bits (628), Expect = 0.0
Identities = 652/660 (98%)
Strand = Plus / Plus
Query: 5 gaattcattgagtcttaccgacaaccccaagaggtgatgtactgctttctgtatgcaagg 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgagtcttaaggacaaccccaagaggtgatgtactgctttctgtatgcaagg 264
Query: 65 gatctggtgaaaggctatggttgtcgctggctcagagtacttcctgacaggttagttcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatctggtgaaaggctatggttgtcgctggctcagagtacttcctgacaggttagttcac 324
Query: 125 tgaacaggacagagctaaagagttgcttaggaaaaacaaacagtgtccactggcaggaca 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tgaacaggacagagctaaagagttgcttaggaaaaacaaacagtgtccactggcagaaca 384
Query: 185 aagatgtggatctctctgtagcagctcaccctgaaatggcagatgtctggtccgtctgcc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 aagatgtggatctctctgtagcagctcaccctgaaatggcagatgtctggtccggctgcc 444
Query: 245 tccactcccccatccacacctctactgactgcatatttcttcccaggagccttggacctg 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 tccactcccccatccacacctctactgactgtatatttcttcccaggagccttggacctg 504
Query: 305 actccaggttccctctcaacactcaaaagaattctcagttccaaacaaccaacaattgat 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 actccaggttccctctcaacactcaaaggaattctcagttccaaacaaccaacaattgat 564
Query: 365 catctagggcagatggacaatgagaactgttgtattgtgcaactccaagttctgctcaat 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 catctagggcagatggacaatgggaactgttgtattgtgcaactccaagttctgctcaat 624
Query: 425 gtggtaacgttataacgttcccctcccagttcagacccaataaagactcagaagacagac 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 625 gtggtaacgttataacgttcccctcccagttcagacccaataaagactcagaagacaggc 684
Query: 485 aggcaaaataccatatgctcacgcagatgagctcattagaagttactgctttagattcat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggcaaaataccatatgctcacgcagatgagctcattagaagttactgctttagattcat 744
Query: 545 ggacaaagggtttgttcacacttctctgggttagacaattaaccacctacccacaggcat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggacaaagggtttgttcacacttctctgggttagacaattaaccacctacccacaggcat 804
Query: 605 ccttcttcacacaaagattctggcatacgtactgaaagacatgtgttctgctggcatgca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ccttcttcacacaaagattctggcatacgtactgaaagacatgtgttctgctggcatgca 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_l20.g1 MSMg01no195_l20.g1 CHROMAT_FILE:
MSMg01no195_l20.g1 PHD_FILE: MSMg01no195_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:02 2005
(399 letters)
>mm_chr9_71258580_71259377
Length = 798
Score = 727 bits (376), Expect = 0.0
Identities = 391/396 (98%), Gaps = 1/396 (0%)
Strand = Plus / Minus
Query: 1 ctacagcattcttacattccctcattactggttctctagggaaaacctccaacctttcaa 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 536 ctacagcattcttacattccctcattactgggtctctagggaaaacctccaacctttcaa 477
Query: 61 catcctgggttttcatttccagagatgccaaagatacaattgtggagtccactcaagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 catcctgggttttcatttccagagatgccaaagatacaattgtggagtccactcaagtag 417
Query: 121 ttcttgaaaaatgaaagctcattttttaaaaaaaagcattgctctgcagtgacaaatttc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttcttgaaaaatgaaagctca-tttttaaaaaaaagcattgctctgcagtgacaaatttc 358
Query: 181 acaattatctgtctttccatatgtctcttttaagcttgccaccaagcagtttcctttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acaattatctgtctttccatatgtctcttttaagcttgccaccaagcagtttcctttcaa 298
Query: 241 gtgcccatgagtgatcatttttcaacttgtcttaggctaccatgaagaaagagaagatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtgcccatgagtgatcatttttcaacttgtcttaggctaccatgaagaaagagaagatct 238
Query: 301 gatgagaggtcctctagatctgagaaatgtggaatgaatatatatgtgtgtgtgtatata 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 237 gatgagaggtcctctagatctgagaaatgtggaatgaatatatgtgtgtgtgtgtgtgta 178
Query: 361 tatatatatatatatatatatatatatatatatata 396
||||||||||||||||||||||||||||||||||||
Sbjct: 177 tatatatatatatatatatatatatatatatatata 142
Score = 74.2 bits (38), Expect = 1e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 355 tatatatatatatatatatatatatatatatatatata 392
||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tatatatatatatatatatatatatatatatatatata 179
Score = 74.2 bits (38), Expect = 1e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 357 tatatatatatatatatatatatatatatatatatata 394
||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tatatatatatatatatatatatatatatatatatata 179
Score = 74.2 bits (38), Expect = 1e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 359 tatatatatatatatatatatatatatatatatatata 396
||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tatatatatatatatatatatatatatatatatatata 179
Score = 74.2 bits (38), Expect = 1e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 361 tatatatatatatatatatatatatatatatatatata 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tatatatatatatatatatatatatatatatatatata 179
Score = 72.3 bits (37), Expect = 5e-17
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 363 tatatatatatatatatatatatatatatatatatat 399
|||||||||||||||||||||||||||||||||||||
Sbjct: 142 tatatatatatatatatatatatatatatatatatat 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 95
Number of extensions: 33
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 8
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space: 307710
Effective search space used: 307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
